Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0215.Seq
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    30   0.39 
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    27   4.8  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    27   4.8  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   4.8  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   6.3  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    26   6.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   6.3  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.3  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    26   8.4  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       26   8.4  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    26   8.4  

>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +3

Query: 366 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAPNPCKDFFVASAARMGI 545
           G   TRGL  S  SST +R S  + +    ED+ +  Q++VV P       +  A  + +
Sbjct: 24  GSSFTRGLKNSTLSSTSSRKSSDEKSRKSSEDKRSP-QSTVVQPG-LLQVTIIEARNLKL 81

Query: 546 PS 551
           PS
Sbjct: 82  PS 83


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 423 DSGSDNAEYLGEDENNDNQNSVVAPNPCKDFFVASAARMGIPSDFQQLVY 572
           +S    A+Y   DE  D++N +    P  D F +   ++GI  +   ++Y
Sbjct: 50  ESRLPGAQYFDIDEAKDHKNPLPHMLPPADEFASYVGKLGIDRNTNVIIY 99


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 803 VTKTICYPGDAANRNQAYKILSENISMVKKNMPHV*NFDCSY*FPKSG 660
           V  TI  P D   RN++ + L  N+  +K  + H+  F      PK G
Sbjct: 89  VASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKG 136


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = -3

Query: 553 SDGIPILAAEATKKSLHG---LGATTEXXXXXXXXSPKYSALSDPLSLAGVLLLSEANNP 383
           S G+P +AAEA +  L+G   L    +        S  +  LS  L    +L  S+  NP
Sbjct: 306 SKGLPKVAAEAIRNILYGPVPLDPNVKIAIVCFDRSVNFFNLSPNLEQPHMLAASDLENP 365

Query: 382 LVTFPPNL 359
            V F   L
Sbjct: 366 FVPFSSGL 373


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 450 LGEDENNDNQNSVVAPNPCKDFFVASAARMGIPSDFQQLVYLTTFATFI 596
           L +D N +   + V+PN   D F    A   +  D Q L Y+     F+
Sbjct: 464 LVKDSNEEGLKNFVSPNTLLDVFKVFDAMEDVELDSQSLSYIHQTLVFL 512


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 818 RYGNCVTKTICYPGDAANRNQAYKILSENISMVKK 714
           R G  V  T+CY GD  N  + Y  L   +++V K
Sbjct: 702 RAGGVVEATMCYSGDMLNPKKKYN-LDYYVNLVDK 735


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 142 KVDELPDLDNLL-QCPVCYEIPTGHIFQCNEGHNVCG 249
           K+D L   + L+ +CP+C   P  +    N  H  CG
Sbjct: 863 KIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCG 899


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 495 PNPCKDFFVASAARMGIPSDFQQLVYLTTFATFILQNF 608
           P  C DF + ++     P     LVYLT    F L  +
Sbjct: 631 PYDCYDFMIGASLCSHQPKFLLSLVYLTDLVLFFLDTY 668


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 291 LFFGTRNYAMEELIANVRKLRAFKLGGKVTRGLLAS 398
           LF GTRN   + ++A  ++ R + +  +   GLL +
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTN 147


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/60 (20%), Positives = 32/60 (53%)
 Frame = +3

Query: 318 MEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAP 497
           ++E I  +++++  ++ G   R +    + S+ A+    DN   LGE++++ +  + + P
Sbjct: 254 IDEAIDRLKEVKRRRIEGFERRKMRREQNLSSDAKVEDQDNDSMLGENKSSVSTETALKP 313


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 709 CPMFEILIAVT-NFPRVVEICPCLKVFTAFCSSL*KFW 599
           C +FE  + +   F R V +  C++ +    SSL KFW
Sbjct: 165 CKVFEAQVRLAAEFQRAVSV-HCVQTYALLYSSLAKFW 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,844,495
Number of Sequences: 5004
Number of extensions: 82317
Number of successful extensions: 221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)