Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0215.Seq
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 38 0.011
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242 36 0.033
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 33 0.41
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 32 0.54
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118 31 0.94
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 31 0.94
01_01_0147 - 1332752-1333447,1333557-1333739 31 0.94
04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754... 31 1.2
05_01_0379 + 2975701-2976831 31 1.6
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412... 30 2.2
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 30 2.9
06_02_0097 + 11710560-11710859,11712605-11713270 29 3.8
10_01_0034 - 414654-415649,416654-417007 29 6.7
05_01_0380 + 2978256-2979284 29 6.7
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190... 29 6.7
01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225... 29 6.7
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779... 28 8.8
06_03_0485 + 21330547-21330684,21331391-21331471,21331610-213316... 28 8.8
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 37.9 bits (84), Expect = 0.011
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 124 SEIVENKVDELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGR*K 258
+ +V ++ L L++LL+CPVC I QC GH +C K
Sbjct: 41 TSLVTVELSSLTGLNDLLECPVCTNSMRPPILQCPNGHTICSNCK 85
>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
Length = 417
Score = 36.3 bits (80), Expect = 0.033
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 172 LLQCPVCYEIPTGHIFQCNEGHNVC 246
+L CPVC++I +FQC+ GH VC
Sbjct: 36 VLHCPVCFQILRPPVFQCDLGHLVC 60
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 32.7 bits (71), Expect = 0.41
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 172 LLQCPVCYEIPTGHIFQCNEGHNVC 246
LL+CPVC I QC+ GH +C
Sbjct: 442 LLECPVCLNAMYPPIHQCSNGHTLC 466
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 32.3 bits (70), Expect = 0.54
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 393 ASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAPNPCKD 512
+S SSS+ A D G DN E +D +ND S + N KD
Sbjct: 469 SSSSSSSLAMDRGEDNHELPRQDHHNDMATSSESVNQLKD 508
>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
Length = 361
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 172 LLQCPVCYEIPTGHIFQCNEGHNVC 246
LL+CPVC I QC GH +C
Sbjct: 97 LLECPVCTNSMFPPIHQCQNGHTLC 121
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 172 LLQCPVCYEIPTGHIFQCNEGHNVC 246
LL+CPVC I QC GH +C
Sbjct: 83 LLECPVCTNSMYPPIHQCQNGHTLC 107
>01_01_0147 - 1332752-1333447,1333557-1333739
Length = 292
Score = 31.5 bits (68), Expect = 0.94
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 175 LQCPVCYEIPTGHIFQCNEGHNVCG 249
L+CP+C+ ++ C GH CG
Sbjct: 46 LECPICFVPFEDRVYMCKNGHAACG 70
>04_04_1161 +
31374240-31374403,31374495-31374812,31375347-31375493,
31375674-31375754,31375799-31375886,31375999-31376176,
31376705-31376794,31376795-31376866,31377247-31377257
Length = 382
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 52 RILLSI-HSG*IDFFINQPTLFYIMSEIVENKVDELPDLDNLLQCP 186
RILL+I H I F+N + Y +EI+++ + ++P+ ++LL+ P
Sbjct: 149 RILLTILHCHPIRAFLNWHLVRYKAAEIIKDLIPQIPEFNDLLKLP 194
>05_01_0379 + 2975701-2976831
Length = 376
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 175 LQCPVCYEIPTGHIFQCNEGHNVC 246
L+C VC+ + IFQC GH VC
Sbjct: 123 LECGVCFLLLRPPIFQCEVGHVVC 146
>09_04_0107 -
14640097-14640348,14640472-14640701,14640805-14641215,
14641481-14643831,14643927-14644093
Length = 1136
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 366 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDE 464
GGK T + AS SSS+P D+ S++ L E
Sbjct: 488 GGKKTTAMAASSSSSSPVHDAESEDENSLDHSE 520
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 366 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQN 482
GG +G + + DS S++ EYL EDE +D+++
Sbjct: 186 GGGAKQGKKKKKTENWMEEDSDSEDEEYLDEDEEDDDEH 224
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 29.5 bits (63), Expect = 3.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 169 NLLQCPVCYEIPTGHIFQCNEGHNVC 246
++L C +C+E ++QC GH C
Sbjct: 83 DVLDCSICFESLRPPLYQCQNGHVAC 108
>10_01_0034 - 414654-415649,416654-417007
Length = 449
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 500 PM*GLFRCLCCKNGNSIRLPAAR 568
P+ FRC CC N +S +P AR
Sbjct: 12 PLLEFFRCRCCHNSSSRAVPPAR 34
>05_01_0380 + 2978256-2979284
Length = 342
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 175 LQCPVCYEIPTGHIFQCNEGHNVC 246
L+C VC+ IFQC GH VC
Sbjct: 73 LECGVCFLPLRPPIFQCEVGHVVC 96
>02_01_0284 +
1907249-1907665,1907816-1907859,1909508-1909546,
1909791-1910112,1910803-1910892,1911541-1911609,
1911969-1912074,1912146-1912234,1912349-1912461,
1912555-1912657
Length = 463
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 297 FGTRNYAMEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDN 476
F T Y + + R+F + G +SDS+S+P+ + SD E G+ N N
Sbjct: 208 FTTMAYPVSPIAGRRSNWRSFAASLNLEDGPASSDSTSSPSEQT-SDGGEVYGDPSENLN 266
Query: 477 QNSV 488
+
Sbjct: 267 SRKL 270
>01_01_0272 -
2249662-2249721,2250110-2250335,2250419-2250615,
2250707-2250955,2251047-2251176,2251473-2251564,
2251735-2251855,2251940-2252028,2252149-2252271,
2252379-2252506,2253039-2253147,2253701-2254000
Length = 607
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 402 SSSTPARDSGSDNAEYLGEDENNDNQNSVVAPNPCKDFF--VASAARMG 542
SSS+ + D G ++AE G E +D+ P+ ++ VA+AAR G
Sbjct: 38 SSSSSSSDEGEEDAEEEGSGEVDDDDGEAAEPSGKEEEVSPVAAAARSG 86
>07_03_0265 +
15976331-15976645,15977575-15977784,15977869-15977916,
15978307-15978675,15978736-15978747,15978763-15978870,
15979156-15979493,15980313-15980430,15983247-15984107,
15984457-15984750
Length = 890
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 318 MEELIANVRKLRAFKLGGKVTRGLLASDSSSTPAR 422
+EE+ NV RAF LG KV + LLA S A+
Sbjct: 852 LEEVKINVDCTRAFSLGSKVLKKLLALPRVSDKAK 886
>06_03_0485 +
21330547-21330684,21331391-21331471,21331610-21331683,
21331767-21331842,21332014-21332081,21332803-21332926,
21333264-21333362,21333679-21333815,21334166-21334247,
21334595-21334657,21335272-21335319,21335452-21335514,
21335840-21335923,21336098-21336118
Length = 385
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -3
Query: 247 HIHYDLHCIGKYDL*GF-HNI-LDTE-VSYPSLAIRQPYFQLSPTLC 116
H +YD+ + K G H+I +D E + +P+ R YF L+PTLC
Sbjct: 173 HTNYDIRMLSKSIEKGVTHDISIDPENIKWPTFK-RLSYFMLAPTLC 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,473,674
Number of Sequences: 37544
Number of extensions: 512155
Number of successful extensions: 1306
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -