Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0215.Seq
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   8.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   8.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   8.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   8.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 300 GTRNYAMEELIANVRKLRAFKLG 368
           G R Y  EEL A +R +++ KLG
Sbjct: 587 GRRAYTEEELQAALRDIQSGKLG 609


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 517 SLPLLQEWEF 546
           SLP+L EW+F
Sbjct: 30  SLPILHEWKF 39


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 211 HIFQCNEGHNVCGR 252
           HI     GH VCGR
Sbjct: 115 HICMLELGHEVCGR 128


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 517 SLPLLQEWEF 546
           SLP+L EW+F
Sbjct: 30  SLPILHEWKF 39


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 517 SLPLLQEWEF 546
           SLP+L EW+F
Sbjct: 30  SLPILHEWKF 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,337
Number of Sequences: 438
Number of extensions: 5356
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)