Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0214.Seq
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    30   0.50 
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.6  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   6.2  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   6.2  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    26   6.2  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    26   8.2  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       26   8.2  

>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 367 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAP 498
           G   TRGL  S  SST +R S  + +    ED+ +  Q++VV P
Sbjct: 24  GSSFTRGLKNSTLSSTSSRKSSDEKSRKSSEDKRSP-QSTVVQP 66


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 638 STXSARPSKSS--GRMKVSEGG*VNELPGSLMEFPFLQPEATKKS 510
           S+ ++ P++SS       S+    N+LP SL + P  QP A+++S
Sbjct: 110 SSVTSAPTQSSHISNFTNSQKYFANDLPNSLTDQPLAQPSASQRS 154


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 143 KVDELPDLDNLL-QCPVCYEIPTGHIFQCNEGHNVCG 250
           K+D L   + L+ +CP+C   P  +    N  H  CG
Sbjct: 863 KIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCG 899


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 772 KASQILSEKYFNGXEKIMPMFENF*LPVTKFPQELVE 662
           +A Q +SE      E  +P +E+  LP+ +FP +L+E
Sbjct: 442 QAKQTISENAQAFEEMKLPTYEDKLLPLVRFPIKLLE 478


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -3

Query: 428 LSLAGVLL-LSEANNPLVTFPPNLKALSF-RTFAMSSSMA*FLVPKNSALHTGQTESRTL 255
           LSLA ++  L+    P V+F   L+   F     +++ +  FLV  N    TG      +
Sbjct: 256 LSLALLIFFLNLVPKPTVSFRVFLRDFDFVGIITITTGVVLFLVGLNIGSTTGHWAHANV 315

Query: 254 ICHIHYDLHCIGKYDL*GFHNILDTEVSYPS 162
           +C++ + + CI  + +  F+    T +  PS
Sbjct: 316 LCYLIFGILCIAGFVVNEFYT-TRTRIITPS 345


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 292 LFFGTRNYAMEELIANVRKLRAFKLGGKVTRGLLAS 399
           LF GTRN   + ++A  ++ R + +  +   GLL +
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTN 147


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/60 (20%), Positives = 32/60 (53%)
 Frame = +1

Query: 319 MEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAP 498
           ++E I  +++++  ++ G   R +    + S+ A+    DN   LGE++++ +  + + P
Sbjct: 254 IDEAIDRLKEVKRRRIEGFERRKMRREQNLSSDAKVEDQDNDSMLGENKSSVSTETALKP 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,512,102
Number of Sequences: 5004
Number of extensions: 70927
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)