Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0214.Seq
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89792-1|AAB94380.1|  339|Caenorhabditis elegans seven-in-absent...    33   0.36 
AC024759-5|AAK68432.1|  419|Caenorhabditis elegans Hypothetical ...    33   0.36 
U21308-5|AAB93318.1|  258|Caenorhabditis elegans Warthog (hedgeh...    30   2.5  
U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U89792-1|AAB94380.1|  339|Caenorhabditis elegans seven-in-absentia 
           protein homologue-1 protein.
          Length = 339

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 149 DELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRLK 259
           D   ++ ++ +CPVC E       QC+ GH VC   +
Sbjct: 79  DSSAEILSVFECPVCLEYMLPPYMQCSSGHLVCSNCR 115


>AC024759-5|AAK68432.1|  419|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.2 protein.
          Length = 419

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 149 DELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRLK 259
           D   ++ ++ +CPVC E       QC+ GH VC   +
Sbjct: 145 DSSAEILSVFECPVCLEYMLPPYMQCSSGHLVCSNCR 181


>U21308-5|AAB93318.1|  258|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 10 protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 406 SSTPARDSGSDNAEYLGEDENNDNQNSVVAPN 501
           ++TP  +  ++ AE L ED+ NDN+  +V  N
Sbjct: 182 TTTPTVEEEAEEAEQLEEDQPNDNEAEIVESN 213


>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = +1

Query: 319 MEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQN 483
           M+E I   RK R  KLG +  RG    +S     RD G D  EY G D + D +N
Sbjct: 229 MKETIDERRKEREEKLGSQ--RGYQRRESYGR--RDRGGDRGEYRG-DRDRDRRN 278


>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +1

Query: 394 ASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAPNPCKDFFVASGCKNGNSIRLPGS-S 570
           ++D   TP        +E + E+EN+D   ++  P+  +D    S   +G S   P S  
Sbjct: 20  SADEDVTPTASPSLVKSEVVKEEENDDADRTLTMPSTSQDIQPESSPAHGRS--APSSQE 77

Query: 571 FT*PPSLTFILPELLEGRAEXVEYLQSM 654
            T PP++  +   L     E   +   M
Sbjct: 78  ITSPPTVRRVATPLEAAEQEYYYFTTDM 105


>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 177 FSVQYVMKSLQVIFSNAMKVIMYVAD*SSAFCLPGMQGTIFWNQE 311
           F  + +M + Q++FS   K +M++    + FC+      I W+ +
Sbjct: 507 FEKELIMDTKQMLFSRDNKFLMFLTKSDNVFCVDLSSKKILWSTD 551


>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 177 FSVQYVMKSLQVIFSNAMKVIMYVAD*SSAFCLPGMQGTIFWNQE 311
           F  + +M + Q++FS   K +M++    + FC+      I W+ +
Sbjct: 507 FEKELIMDTKQMLFSRDNKFLMFLTKSDNVFCVDLSSKKILWSTD 551


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,235,542
Number of Sequences: 27780
Number of extensions: 393046
Number of successful extensions: 972
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)