Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0214.Seq
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   8.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 301 GTRNYAMEELIANVRKLRAFKLG 369
           G R Y  EEL A +R +++ KLG
Sbjct: 587 GRRAYTEEELQAALRDIQSGKLG 609


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +1

Query: 367 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAPNPCKDFFVASGCKNGN 546
           G  V      + ++ST    + + NA     + NN+N N+    N   D    +G  N N
Sbjct: 212 GAVVLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNN----NGANDNGNGNGASNNN 267

Query: 547 S 549
           +
Sbjct: 268 N 268


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 212 HIFQCNEGHNVCGR 253
           HI     GH VCGR
Sbjct: 115 HICMLELGHEVCGR 128


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +1

Query: 703 NFQTWA*FFLXH*NIFPIRFGXLWXDDGLAFTLG 804
           NF+ +  F   +  ++ +  G +W D G    LG
Sbjct: 144 NFKAYCLFSFLNTIVYCVPAGWIWGDQGFLKKLG 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,887
Number of Sequences: 438
Number of extensions: 4767
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)