Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0212.Seq
(526 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13; Endopt... 108 7e-23
UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8... 91 1e-17
UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gamb... 91 1e-17
UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella ve... 81 2e-14
UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44; Coelom... 76 4e-13
UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1; ... 75 8e-13
UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 ... 68 1e-10
UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3; Ixodoid... 65 8e-10
UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8; Pezizom... 63 3e-09
UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=1... 63 4e-09
UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma... 62 1e-08
UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7; Pezizomy... 59 7e-08
UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17; Magn... 59 7e-08
UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2; Caenorh... 54 3e-06
UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=... 53 4e-06
UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150, w... 46 5e-04
UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthor... 45 0.001
UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1; F... 45 0.001
UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2; Dictyos... 45 0.001
UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 44 0.002
UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2; Cryptos... 42 0.011
UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1; ... 42 0.011
UniRef50_A4S554 Cluster: Ribosomal protein L28, component of cyt... 38 0.14
UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9; Trypano... 36 0.57
UniRef50_UPI00006CFBC8 Cluster: hypothetical protein TTHERM_0048... 34 1.7
UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=... 34 1.7
UniRef50_Q59MG3 Cluster: Putative uncharacterized protein; n=1; ... 34 2.3
UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing pr... 33 3.0
UniRef50_Q9YFR5 Cluster: Putative MFS transporter; n=1; Aeropyru... 33 3.0
UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1; ... 33 4.0
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:... 33 5.3
UniRef50_UPI0000F2B599 Cluster: PREDICTED: similar to CD40; n=1;... 32 7.0
UniRef50_Q8GCM9 Cluster: ORF228; n=2; Mycoplasma|Rep: ORF228 - M... 32 9.3
>UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13;
Endopterygota|Rep: 60S ribosomal protein L28 -
Drosophila melanogaster (Fruit fly)
Length = 144
Score = 108 bits (260), Expect = 7e-23
Identities = 46/76 (60%), Positives = 61/76 (80%)
Frame = +3
Query: 57 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 236
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D+KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 237 FTVVYKKQRLPESPLK 284
FT V KK + + P K
Sbjct: 64 FTAVLKKGKYAQRPAK 79
Score = 73.3 bits (172), Expect = 3e-12
Identities = 35/67 (52%), Positives = 49/67 (73%)
Frame = +2
Query: 227 QEGIHSSVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 406
++G + +++ K ++PAKN +R FKAG RRSL K+K LL + YR DL +A LRRASA
Sbjct: 61 KKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASA 120
Query: 407 ILRSQRP 427
+LRSQ+P
Sbjct: 121 VLRSQKP 127
>UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8;
Neoptera|Rep: Ribosomal protein L28-like protein -
Maconellicoccus hirsutus (hibiscus mealybug)
Length = 139
Score = 91.5 bits (217), Expect = 1e-17
Identities = 43/78 (55%), Positives = 53/78 (67%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 233
MS+ L WMI RNNNA+L+KKR+IKKPFS EP N+ N+ SFRYNGL+ K V V D K
Sbjct: 1 MSADLYWMITRNNNAYLLKKRDIKKPFSTEPGNLKNVASFRYNGLVQPKTVDVRAAKDGK 60
Query: 234 GFTVVYKKQRLPESPLKT 287
GF V K+ + P K+
Sbjct: 61 GFVVTTKRAKQQNKPGKS 78
Score = 58.8 bits (136), Expect = 7e-08
Identities = 30/65 (46%), Positives = 39/65 (60%)
Frame = +2
Query: 230 EGIHSSVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 409
+G + + AK KP K+ I AG RRSLYK++R L YR DL + LR+ASAI
Sbjct: 60 KGFVVTTKRAKQQNKPGKSNISVTMSAGPRRSLYKLRRYLDGGKYRKDLTQVALRKASAI 119
Query: 410 LRSQR 424
L SQ+
Sbjct: 120 LESQK 124
>UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000014265 - Anopheles gambiae
str. PEST
Length = 158
Score = 91.1 bits (216), Expect = 1e-17
Identities = 38/79 (48%), Positives = 58/79 (73%)
Frame = +3
Query: 48 VKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPD 227
+ SS LNW+I+R++NAFL+K+R+I+KPFS EP N+TNL SFRY+GL+H K + + +
Sbjct: 1 IMASSHLNWLIVRDHNAFLLKRRDIRKPFSTEPGNLTNLSSFRYSGLVHHKTI-TITPAE 59
Query: 228 RKGFTVVYKKQRLPESPLK 284
+KG VY ++++ P K
Sbjct: 60 KKGVNFVYNRKKVLNKPAK 78
Score = 66.9 bits (156), Expect = 3e-10
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +2
Query: 227 QEGIHSSVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 406
++G++ K KPAK ++ K G RR+L K+ ++KAN YR DL A LRRASA
Sbjct: 60 KKGVNFVYNRKKVLNKPAKAPVKVTLKEGPRRTLKKIANMMKANRYRADLRGAALRRASA 119
Query: 407 ILRSQRP 427
ILRSQRP
Sbjct: 120 ILRSQRP 126
>UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 137
Score = 80.6 bits (190), Expect = 2e-14
Identities = 38/77 (49%), Positives = 50/77 (64%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 233
MSS L W IIRNN+ FLV+ + K +KEPNNVT L++F+YNGL++KK VGV P K
Sbjct: 1 MSSDLQWSIIRNNSCFLVRSQG--KTLTKEPNNVTGLNAFKYNGLVNKKVVGVDAAPSGK 58
Query: 234 GFTVVYKKQRLPESPLK 284
G + +K + P K
Sbjct: 59 GVVITTRKNKAANKPGK 75
Score = 49.2 bits (112), Expect = 6e-05
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +2
Query: 221 P*QEGIHSSVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRA 400
P +G+ + ++ KA KP K + + +RR+L ++ + N+YR DL +RRA
Sbjct: 55 PSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRA 114
Query: 401 SAILRSQRP 427
AILRSQ+P
Sbjct: 115 CAILRSQKP 123
>UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44;
Coelomata|Rep: 60S ribosomal protein L28 - Homo sapiens
(Human)
Length = 137
Score = 76.2 bits (179), Expect = 4e-13
Identities = 36/75 (48%), Positives = 50/75 (66%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 233
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 234 GFTVVYKKQRLPESP 278
G VV K++ P
Sbjct: 59 GVVVVIKRRSGQRKP 73
Score = 58.4 bits (135), Expect = 9e-08
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +2
Query: 230 EGIHSSVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 409
+G+ ++ RKPA + +R AR +L ++ +++ N YR DL A +RRASAI
Sbjct: 58 KGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 117
Query: 410 LRSQRPI 430
LRSQ+P+
Sbjct: 118 LRSQKPV 124
>UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 221
Score = 75.4 bits (177), Expect = 8e-13
Identities = 30/76 (39%), Positives = 50/76 (65%)
Frame = +3
Query: 57 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 236
S L W+++RNN++F+VK++ I + FS+EP N+ LHS++Y+GL++ KAVG+ KG
Sbjct: 3 SQDLQWLLVRNNSSFIVKQKGIGRIFSREPRNLVQLHSYKYSGLVNAKAVGIEAAKSGKG 62
Query: 237 FTVVYKKQRLPESPLK 284
+ K + S +K
Sbjct: 63 VVITTKNAKQSSSAIK 78
>UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 -
Suberites domuncula (Sponge)
Length = 136
Score = 68.1 bits (159), Expect = 1e-10
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIKKP---FSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 224
MS+ L W +I+N+++FL++++ + F+ EPNNV N +SF++NGL++KK VGV
Sbjct: 1 MSAELQWELIKNSSSFLLRRKGPRGSGVTFTTEPNNVMNKNSFKFNGLVNKKVVGVSSAA 60
Query: 225 DRKGFTVVYKKQRLPESPLK 284
D KG K+ ++ P K
Sbjct: 61 DNKGVLFKTKRSKVVSKPAK 80
Score = 54.8 bits (126), Expect = 1e-06
Identities = 26/66 (39%), Positives = 37/66 (56%)
Frame = +2
Query: 230 EGIHSSVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 409
+G+ + +K KPAK +R RR+ +K+ L+ YR DL + +RRASAI
Sbjct: 63 KGVLFKTKRSKVVSKPAKMFVRATLSKDRRRAFKSIKKNLECTEYRPDLAELAVRRASAI 122
Query: 410 LRSQRP 427
L SQRP
Sbjct: 123 LSSQRP 128
>UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3;
Ixodoidea|Rep: 60S ribosomal protein L28 - Argas
monolakensis
Length = 142
Score = 65.3 bits (152), Expect = 8e-10
Identities = 32/77 (41%), Positives = 47/77 (61%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 233
+S + WM++RN ++FLVKKRNIKK FS +P N +++ R+ G I K+A+ V + K
Sbjct: 2 VSRTYRWMVVRNCSSFLVKKRNIKKWFSTDPLNPKGVYANRFAGTIKKRALTVEPHSSGK 61
Query: 234 GFTVVYKKQRLPESPLK 284
G T VY + P K
Sbjct: 62 GVTFVYLAHKGATKPAK 78
Score = 47.6 bits (108), Expect = 2e-04
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 260 KATRKPAKNLIRRPFKAGARRSLYKVKRLLKA-NHYRTDLCKATLRRASAILRSQRPI 430
K KPAK L R G RR++ ++ +K +YR DL + RRASAIL+SQR I
Sbjct: 71 KGATKPAKRLKRVQLVKGPRRTMVSIRNWIKGMGYYRRDLRRVCQRRASAILKSQRAI 128
>UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8;
Pezizomycotina|Rep: 60S ribosomal protein L28 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 157
Score = 63.3 bits (147), Expect = 3e-09
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 230
+SS L W I RN NAFLVK+R FS++P N+ N SF+Y G + KAVG V+ +
Sbjct: 8 VSSDLVWQITRNQNAFLVKRRTGGGSQFSRDPLNLQNKQSFKYAGYANTKAVG-VQATEN 66
Query: 231 KGFTVVYKKQRLPESPLK 284
G V+ KK P+ P K
Sbjct: 67 GGVVVITKKPGNPQQPAK 84
Score = 36.7 bits (81), Expect = 0.33
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 269 RKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 427
++PAKNL+ + A R +YK V N YR DL + + R SAI RSQ+P
Sbjct: 80 QQPAKNLVSVSWGPNAATRKIYKAVASKTAKNGYRADLREDAVARVSAIRRSQKP 134
>UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=19;
Neodiplogasteridae|Rep: Large subunit ribosomal protein
28 - Pristionchus sp. 11 RS5228
Length = 127
Score = 62.9 bits (146), Expect = 4e-09
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Frame = +3
Query: 78 IIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYK- 254
+IRNN+AFL ++R I+K FS+EP N+ ++S YNGL + KAVGV D K V K
Sbjct: 2 VIRNNSAFLRRQRGIQKAFSREPLNLKGINSPNYNGLTNNKAVGVTLAEDNKSVVVSVKK 61
Query: 255 --KQRLP-ESPLKT 287
K+ LP +S +KT
Sbjct: 62 TGKKNLPAQSVIKT 75
>UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma
japonicum|Rep: Ribosomal protein L28 - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 61.7 bits (143), Expect = 1e-08
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 233
MSS L W +I+NN+ FL+K+ + FS++P N+ N + FRY G +HKKA+G+ E K
Sbjct: 1 MSSHLIWDLIKNNHCFLMKRG--PECFSRDPLNLKNKNCFRYCGPVHKKAIGIKEERYGK 58
Query: 234 GFTVVYKKQRLPESPLK 284
G V K P K
Sbjct: 59 GVVVTTKNVAKDHKPAK 75
>UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7;
Pezizomycotina|Rep: RIB40 genomic DNA, SC111 -
Aspergillus oryzae
Length = 157
Score = 58.8 bits (136), Expect = 7e-08
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 230
+SS L W + RN NAFLVK+ + FS++P N+ N HSF+Y G + KA+G V+ +
Sbjct: 8 VSSDLVWQLTRNQNAFLVKRNSGGGSQFSRDPLNLQNKHSFKYAGYANTKAIG-VQPTEN 66
Query: 231 KGFTVVYKKQRLPESPLK 284
G V+ KK + P K
Sbjct: 67 GGVVVLTKKSGNAQQPGK 84
Score = 37.1 bits (82), Expect = 0.25
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 233 GIHSSVQEAKATRKPAKNLIRRPF--KAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 406
G+ +++ ++P KN +R F KA R+ V N YR DL + + R SA
Sbjct: 68 GVVVLTKKSGNAQQPGKNAVRVTFGPKASTRKIYKGVADKTAKNGYRADLREDAVARVSA 127
Query: 407 ILRSQRP 427
I RSQ+P
Sbjct: 128 IRRSQKP 134
>UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17;
Magnoliophyta|Rep: 60S ribosomal protein L28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 143
Score = 58.8 bits (136), Expect = 7e-08
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
Frame = +3
Query: 66 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 212
L W I++NNN FLVK + N K FSKE NN+TN+HS++++GL +KK V +
Sbjct: 8 LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTI 59
>UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L28 -
Caenorhabditis elegans
Length = 126
Score = 53.6 bits (123), Expect = 3e-06
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 233
MS +L W +IRNN+AFL +R I K FS E N+ ++S +Y+GL +K A+ V + K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58
Query: 234 GFTVVYKKQR 263
G V K ++
Sbjct: 59 GVVVSTKNEK 68
>UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=1;
Schizosaccharomyces pombe|Rep: Probable 60S ribosomal
protein L28e - Schizosaccharomyces pombe (Fission yeast)
Length = 134
Score = 53.2 bits (122), Expect = 4e-06
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 48 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 224
+ +S+ L W +IR+NN FLVK+ F++EP NV+ ++ R++GL + KAVGV N
Sbjct: 1 MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60
Query: 225 DRKGFTVVYKKQRLPESPLK 284
R + + + P K
Sbjct: 61 PRGVVLITKTNPKNAQKPAK 80
Score = 39.1 bits (87), Expect = 0.061
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +2
Query: 260 KATRKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 427
K +KPAK L R+ A A R YK + + YR DL K ++ RASAIL SQRP
Sbjct: 73 KNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRP 129
>UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_150,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 147
Score = 46.0 bits (104), Expect = 5e-04
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVV 215
MS + W +++ NNAFLVK+ + S +P N T + ++ G I K AVGVV
Sbjct: 1 MSQQVLWEVVKGNNAFLVKRNGL--TLSTDPFNNTGVQTYSSTGFISKNAVGVV 52
>UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthora
infestans|Rep: Ribosomal protein L28 - Phytophthora
infestans (Potato late blight fungus)
Length = 139
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +3
Query: 57 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 236
S +L W++ +N ++FLVK+ F++E N+ N + +Y+GL KAV + D+K
Sbjct: 3 SDTLTWLLTKNTSSFLVKRNG--NEFAREKFNLLNRNCRKYSGLASTKAVD-ISISDKK- 58
Query: 237 FTVVYKKQRLPESPLKT*SAVHSR 308
T+ K ++ + P K +AV R
Sbjct: 59 VTLTTKIEKATKKPAKAQNAVPLR 82
Score = 39.1 bits (87), Expect = 0.061
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 260 KATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 409
KAT+KPAK P + GAR ++ + N+YR DL KA L + S +
Sbjct: 67 KATKKPAKAQNAVPLRKGARGGANTIRANISRNYYRRDLKKAALAKWSRL 116
>UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1;
Filobasidiella neoformans|Rep: 60s ribosomal protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 156
Score = 44.8 bits (101), Expect = 0.001
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 233
MSS L W+++RN N+F VK + FS+E N+ N + +Y+GL + K V + +P
Sbjct: 1 MSSDLTWLLVRNWNSFQVKGGH-GPVFSREKGNLLNKSAHKYSGLANSKVVSI--HPSAA 57
Query: 234 GFTVVYK 254
G + K
Sbjct: 58 GGITITK 64
>UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2;
Dictyostelium discoideum|Rep: 60S ribosomal protein L28
- Dictyostelium discoideum (Slime mold)
Length = 132
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVE-NPDR 230
MS L W II+ NNAFL + S EP N+ N +S +Y+GL + + V N
Sbjct: 1 MSQDLVWSIIKKNNAFLKSSHGL--TLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGKV 58
Query: 231 KGFTVVYKKQRLPESPLKT 287
+ + KK P KT
Sbjct: 59 VVSSKIVKKAAFPAQSKKT 77
>UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 183
Score = 44.4 bits (100), Expect = 0.002
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 212
+S+ W ++ NA+LVK++ I S++P + NL + +GL H KAVGV
Sbjct: 48 VSNDFIWECTKSTNAYLVKRKGIDTTLSRDPYALNNLSTHYESGLSHDKAVGV 100
>UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L28 -
Cryptosporidium parvum Iowa II
Length = 127
Score = 41.5 bits (93), Expect = 0.011
Identities = 18/60 (30%), Positives = 36/60 (60%)
Frame = +3
Query: 57 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 236
S+ L W ++ N +F+ K+N F+ EP N+ NL++ +Y+GL ++++ + P+ G
Sbjct: 3 STELLWQCVKKNTSFI--KKNNGFTFTSEPFNIMNLNTLKYSGLAARRSISMDLVPNSNG 60
>UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 192
Score = 41.5 bits (93), Expect = 0.011
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +3
Query: 54 MSSSLNWMIIRNNNAFLVKKR-NIKKPFSKEPNNVTNLHSFR 176
+SS L W + RN NA+LVK+ + FS++P NV N HSF+
Sbjct: 8 VSSDLVWQLTRNQNAYLVKRNTHGGVQFSRDPLNVLNKHSFK 49
Score = 35.1 bits (77), Expect = 1.00
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 233 GIHSSVQEAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKANHYRTDLCKATLRRASA 406
G+ + ++ +++PAK+L + GA R +YK V N YR DL + + R SA
Sbjct: 103 GVVTITKKPGTSQQPAKSLAVVTYGPGASNRKIYKGVADRTAKNGYRADLRQEAVSRVSA 162
Query: 407 ILRSQR 424
I RSQ+
Sbjct: 163 IRRSQK 168
>UniRef50_A4S554 Cluster: Ribosomal protein L28, component of
cytosolic 80S ribosome and 60S large subunit; n=1;
Ostreococcus lucimarinus CCE9901|Rep: Ribosomal protein
L28, component of cytosolic 80S ribosome and 60S large
subunit - Ostreococcus lucimarinus CCE9901
Length = 121
Score = 37.9 bits (84), Expect = 0.14
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 48 VKMSSSLNWMIIRNNNAFL-VKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 224
V S W + + +NAF FS EP NVT SFR +GL + K + + E+
Sbjct: 5 VPASDDFLWQVTKKHNAFTRASTSGHGARFSAEPGNVTAEVSFRASGLANAKTIDIREHD 64
Query: 225 DRKG 236
KG
Sbjct: 65 GGKG 68
>UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9;
Trypanosomatidae|Rep: 60S ribosomal protein L28 -
Trypanosoma cruzi
Length = 146
Score = 35.9 bits (79), Expect = 0.57
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 57 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 230
S+ L W+++R N+ FL K+ I+ S +P N + R+ G ++ KA V DR
Sbjct: 4 STDLQWLLVRQNSKFLQKRNGIR--LSSDPFNNNANWTKRHAGFLNTKAAVVKTKGDR 59
>UniRef50_UPI00006CFBC8 Cluster: hypothetical protein
TTHERM_00487140; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00487140 - Tetrahymena
thermophila SB210
Length = 294
Score = 34.3 bits (75), Expect = 1.7
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 60 SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVT 158
S L W I++NNNAFLVK + F+ +P +VT
Sbjct: 2 SQLVWEIVKNNNAFLVKNNGV--AFTTDPFSVT 32
>UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=2;
Theileria|Rep: 60S ribosomal protein l28, putative -
Theileria annulata
Length = 150
Score = 34.3 bits (75), Expect = 1.7
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +3
Query: 66 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGL 188
L W ++RNN+AFL K R FS E +N+ + HS R+ L
Sbjct: 20 LLWELVRNNHAFLKKSRT--TTFSLESHNLLSKHSPRFTVL 58
>UniRef50_Q59MG3 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 481
Score = 33.9 bits (74), Expect = 2.3
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -2
Query: 345 NLFT-LYSDLLAPALNGRRIKFLAGFLVAFASCTLL*IPSCQ 223
N FT +YS +L+P ++ ++ F + FL AF S LL PS Q
Sbjct: 124 NAFTPIYSSILSPYMSNNKLSFYSSFLAAFTS-ALLNFPSFQ 164
>UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing
protein; n=1; Tetrahymena thermophila SB210|Rep: Cyclin,
N-terminal domain containing protein - Tetrahymena
thermophila SB210
Length = 353
Score = 33.5 bits (73), Expect = 3.0
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 51 KMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNN-VTN-LHSFRYNGLIHKKAVGVVE 218
K S LNW + N + K+NIK K+ NN +TN L F +N I+K+ + ++E
Sbjct: 36 KKKSYLNWQGCKKINNKQINKQNIKATQIKKKNNQLTNSLLGFSFNQSINKQIIQLLE 93
>UniRef50_Q9YFR5 Cluster: Putative MFS transporter; n=1; Aeropyrum
pernix|Rep: Putative MFS transporter - Aeropyrum pernix
Length = 418
Score = 33.5 bits (73), Expect = 3.0
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = -2
Query: 342 LFTLYSDLLAPALNGRRIKFLAGFLVAFASCTLL*IPS 229
+FTL S L+ AL RR+ AG++V AS TLL +PS
Sbjct: 56 IFTLLSGPLSDALGARRV-VAAGYIVKAASFTLLAVPS 92
>UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 146
Score = 33.1 bits (72), Expect = 4.0
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 66 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 224
L W +I+ NNA++ K + + F+KE N+ H+ Y+GL+ + + +P
Sbjct: 27 LVWELIKKNNAYIFKSGH--ETFTKERYNLMARHTPMYSGLMQNSVMNLELSP 77
>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
Ymf77 - Tetrahymena pigmentosa
Length = 1260
Score = 32.7 bits (71), Expect = 5.3
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 66 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 230
L W+ + NNN FL K N+K + N+ N + + N I +GV++ D+
Sbjct: 161 LFWIKLNNNNIFLKKNNNLKNLKNLNLKNLKNSINNK-NNFIKINEIGVIDKKDK 214
>UniRef50_UPI0000F2B599 Cluster: PREDICTED: similar to CD40; n=1;
Monodelphis domestica|Rep: PREDICTED: similar to CD40 -
Monodelphis domestica
Length = 232
Score = 32.3 bits (70), Expect = 7.0
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +2
Query: 59 VVTELDDHPQQQCIPCEEAQYQKAVQQGA-----EQCD*PPLLQVQR---LDSQESCWCR 214
+VT+ + + QC+PC+E ++Q + + CD LQ+Q+ L+ C C
Sbjct: 13 LVTDCTEDSETQCMPCQEGEFQSSWNHDKYCHQHKYCDPNLHLQIQKEGSLEKDTICICT 72
Query: 215 GEP*QEGIHSSVQEAKA 265
G G+H S E ++
Sbjct: 73 G-----GLHCSSPECES 84
>UniRef50_Q8GCM9 Cluster: ORF228; n=2; Mycoplasma|Rep: ORF228 -
Mycoplasma fermentans
Length = 228
Score = 31.9 bits (69), Expect = 9.3
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +3
Query: 72 WMIIRNNNAFLVKKRNIKKPFSKEP--NNVTNLHSFRYNGLIHKK--AVGVVENPDRKGF 239
WM + N + L+K+ N+K P ++ N+ +F++NG ++++ V V+ N +
Sbjct: 10 WMSLVNKDNLLIKEENLKPKKIVFPLIGSIINVQAFKFNGELYRQWNGVKVLRNTPQHYV 69
Query: 240 TVVYK 254
+YK
Sbjct: 70 LFMYK 74
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 487,550,222
Number of Sequences: 1657284
Number of extensions: 9739150
Number of successful extensions: 25592
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 24815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25567
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33037407449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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