Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0212.Seq
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    53   2e-08
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    31   0.11 
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    26   4.0  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   5.2  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   5.2  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   6.9  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   9.1  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
 Frame = +3

Query: 48  VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 224
           + +S+ L W +IR+NN FLVK+       F++EP NV+  ++ R++GL + KAVGV  N 
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60

Query: 225 DRKGFTVVYKKQRLPESPLK 284
            R    +     +  + P K
Sbjct: 61  PRGVVLITKTNPKNAQKPAK 80



 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 260 KATRKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 427
           K  +KPAK L R+   A A  R  YK +   +    YR DL K ++ RASAIL SQRP
Sbjct: 73  KNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRP 129


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 251 VHYCESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFDIALLH 105
           +HYC S  +  LHDT   LV       G + S +++     + D  L H
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMIDGRLHH 299


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 112 FFTRNALLLRMIIQFSDDDIFTV*TYFYTKHNVLTMC 2
           FFT ++L     +  S   I     Y Y  HN+LT+C
Sbjct: 449 FFTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVC 485


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 60  SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLH 167
           S ++ + + NNN ++V + +I+ P+S    +   LH
Sbjct: 415 SQVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLH 450


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 87  NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHK-KAVGVVENPDRK 233
           NN ++L+KK+   K     P+ V     +  NG+  K  A   V  P RK
Sbjct: 185 NNKSYLLKKKRFLKEVGNSPSAV-YCRYYNANGICGKGAACRFVHEPTRK 233


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 180 NGLIHKKAVGVVENPDRKGFTVVYKKQRLPESP 278
           NGL+  + V ++ NPD  G +  +    LP SP
Sbjct: 679 NGLVGLETVHMLTNPDDAGSSNRFSMSVLPISP 711


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 208 PTAFL*IKPLYLKEWRLVTLFGSLLN 131
           PT+F  IKPL  + +R+  L+  LL+
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLH 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,690
Number of Sequences: 5004
Number of extensions: 39379
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)