Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0212.Seq
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 58 3e-09
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 56 1e-08
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 56 2e-08
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 29 2.3
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 2.3
09_02_0336 - 7397745-7398308,7398813-7400723 29 3.0
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594... 29 3.0
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 27 7.0
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 27 7.0
03_06_0220 + 32452831-32452944,32453618-32453911,32454416-324545... 27 7.0
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 27 7.0
06_02_0222 + 13229330-13229501,13230175-13230275,13230381-132305... 27 9.2
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Frame = +3
Query: 63 SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 212
SL W +++ NN+FLVK+ N K FSKEPNN+ N+HS++++GL +KK V V
Sbjct: 7 SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTV 59
Score = 33.9 bits (74), Expect = 0.080
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 245 SVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 418
S + + KPA + + R+ VK + N+YR DL K L R SA+ RS
Sbjct: 72 STTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 129
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Frame = +3
Query: 66 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 236
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + +
Sbjct: 8 LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67
Query: 237 FTVV----YKKQRLP 269
V+ KKQ P
Sbjct: 68 AVVLSTTKTKKQNAP 82
Score = 33.9 bits (74), Expect = 0.080
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 245 SVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 418
S + K PAK + + R+ VK + N+YR DL K L R S++ RS
Sbjct: 72 STTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Frame = +3
Query: 66 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 212
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V +
Sbjct: 8 LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTI 59
Score = 33.9 bits (74), Expect = 0.080
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 245 SVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 418
S + K PAK + + R+ VK + N+YR DL K L R S++ RS
Sbjct: 72 STTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 41 LNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRGE 220
L+ +N++++ H + Q I CE++ + G LQ L+ + SC GE
Sbjct: 691 LDSQNILISMSSQHIRNQAI-CEQSHLSRITYYGYFDTSLGRYLQDSLLNEKHSCLSCGE 749
Query: 221 P*QEGIHS 244
P + ++S
Sbjct: 750 PPEAHMYS 757
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 45 TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 176
T++ SS+L WM+I + N L + + FSK P T + +FR
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFR 621
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +2
Query: 50 KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 151
KN ++ L+ +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217
>03_05_0394 +
23758392-23758625,23759097-23759273,23759349-23759453,
23759640-23759681,23759763-23759960,23760037-23760165,
23760248-23760377,23761119-23761179,23761241-23761322,
23761402-23761653
Length = 469
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 164 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 54
+VSHI+ + E+ D+AL + EC + + H Q H
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 87 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 236
N A + K KKP ++P +Y GL+ KK+ N + G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 425 ASGSGGWLKHDEG*PCISLCGSG*P 351
A GSGGW + +G + CG+G P
Sbjct: 28 AEGSGGWRRRRDGHVARARCGAGEP 52
>03_06_0220 +
32452831-32452944,32453618-32453911,32454416-32454503,
32454596-32454717,32454985-32455142,32455201-32455273,
32455552-32455640,32455753-32455858,32455967-32456179,
32456726-32456920,32457051-32457128,32457209-32457523
Length = 614
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 203 CWCRGEP*QEGIHSSVQEAKATRKPAKNL-IRRPFKAGARRSLYKVKRLL 349
CW + P +E H SV A ++ P R A +R KVKR L
Sbjct: 483 CWVKNHPVKEQPHDSVGTAILSKSPKLEANFSRAAAALSRAQAKKVKRFL 532
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 378 ARLPFVVLQPSSAPRGPLKQKRLRQPQPSR 467
A PF + +S+PR P + RQP P R
Sbjct: 10 ASAPFPTIPAASSPRNPRAARPRRQPAPFR 39
>06_02_0222 +
13229330-13229501,13230175-13230275,13230381-13230574,
13232600-13233068
Length = 311
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 317 WHQP*MDGGLSF*RAFW*PLLLVHYCESLPVRVLHD 210
W P DG ++ FW P ++V + +S+P+RV +
Sbjct: 136 WFDP-TDGYHNY-TIFWNPCMIVWFVDSIPIRVFRN 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,388,464
Number of Sequences: 37544
Number of extensions: 280719
Number of successful extensions: 697
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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