Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0212.Seq
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            59   2e-09
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    53   1e-07
At4g17230.1 68417.m02591 scarecrow-like transcription factor 13 ...    29   2.5  
At4g13080.1 68417.m02039 xyloglucan:xyloglucosyl transferase, pu...    29   2.5  
At1g22310.1 68414.m02791 DNA-binding protein-related contains Pf...    29   2.5  

>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
 Frame = +3

Query: 66  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 212
           L W I++NNN FLVK   + N K  FSKE NN+TN+HS++++GL +KK V +
Sbjct: 8   LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTI 59



 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 254 EAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 424
           + K   KP  ++ +   K    R    V   +  N+YR DL KA L R SAI +  R
Sbjct: 74  KTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLR 130


>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
 Frame = +3

Query: 66  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 236
           L W I++ NN FLVK   + N K  FSKE NN+ N++S++++GL +KK V +      +G
Sbjct: 8   LIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQG 67

Query: 237 FTVVYKKQRLPESP 278
             +   K +    P
Sbjct: 68  VVLGTTKTKRQNKP 81



 Score = 31.1 bits (67), Expect = 0.47
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +2

Query: 230 EGIHSSVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 409
           +G+     + K   KP  ++ +   K    R    V   +  N+YR DL KA L R SAI
Sbjct: 66  QGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAI 125

Query: 410 LRSQR 424
            +  R
Sbjct: 126 SKGLR 130


>At4g17230.1 68417.m02591 scarecrow-like transcription factor 13
           (SCL13)
          Length = 287

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 113 AQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRG 217
           +QY   +Q+ A+    PPLL+V  +D  +S + RG
Sbjct: 91  SQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARG 125


>At4g13080.1 68417.m02039 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           endoxyloglucan transferase EXGT-A1 GI:5533309 from
           [Arabidopsis thaliana]
          Length = 292

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 269 W*PLLLVHYCESLPVRVLHDTNSFLVNQAVVPEGVEVS 156
           W P  +V Y +++PVRV  +T S  +N    P  V VS
Sbjct: 158 WNPYQIVLYVDNIPVRVFKNTTSQGMNYPSKPMQVVVS 195


>At1g22310.1 68414.m02791 DNA-binding protein-related contains Pfam
           profiles PF02178: AT hook motif, PF01429: Methyl-CpG
           binding domain
          Length = 425

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 239 HSSVQEAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLR 394
           H SV   +AT    +NL+RR      R ++  VK   K+  + +DLC  ++R
Sbjct: 10  HFSVSALRATLNHRRNLLRR----NVRETILPVKNKRKSRRF-SDLCSMSIR 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,576,692
Number of Sequences: 28952
Number of extensions: 215521
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)