Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0211.Seq
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 134 5e-32
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 134 5e-32
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 134 5e-32
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 38 0.006
U70857-9|AAB09174.1| 261|Caenorhabditis elegans C.elegans homeo... 29 2.6
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.4
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 134 bits (325), Expect = 5e-32
Identities = 80/154 (51%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Frame = -3
Query: 722 EAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHT 543
EAVPGDNV FNVK + I C K + F AQVI + +T
Sbjct: 267 EAVPGDNVGFNVKNVSVKDIRRGSVCSD-SKQDPAKEARTFHAQVIIMNHP-GQISNGYT 324
Query: 542 SLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366
+ H H +F E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 325 PVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDY 384
Query: 365 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
PLGRFAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 385 APLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 418
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 134 bits (325), Expect = 5e-32
Identities = 80/154 (51%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Frame = -3
Query: 722 EAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHT 543
EAVPGDNV FNVK + I C K + F AQVI + +T
Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSD-SKQDPAKEARTFHAQVIIMNHP-GQISNGYT 358
Query: 542 SLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366
+ H H +F E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 359 PVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDY 418
Query: 365 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
PLGRFAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 419 APLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 134 bits (325), Expect = 5e-32
Identities = 80/154 (51%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Frame = -3
Query: 722 EAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHT 543
EAVPGDNV FNVK + I C K + F AQVI + +T
Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSD-SKQDPAKEARTFHAQVIIMNHP-GQISNGYT 358
Query: 542 SLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366
+ H H +F E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 359 PVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDY 418
Query: 365 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
PLGRFAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 419 APLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -3
Query: 485 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 309
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 308 IKAV 297
+K V
Sbjct: 528 LKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = -3
Query: 524 CPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 345
C C F + +++ G+ + P+ I G +A+V + + +E+F LGR
Sbjct: 514 CVPCT-FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVT 572
Query: 344 VRDMRQTVAVGVIKAV 297
R T+A G+++ V
Sbjct: 573 FRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = -3
Query: 524 CPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 345
C C F + +++ G+ + P+ I G +A+V + + +E+F LGR
Sbjct: 532 CVPCT-FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVT 590
Query: 344 VRDMRQTVAVGVIKAV 297
R T+A G+++ V
Sbjct: 591 FRAGGNTIAAGIVEKV 606
>U70857-9|AAB09174.1| 261|Caenorhabditis elegans C.elegans homeobox
protein 33 protein.
Length = 261
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Frame = -3
Query: 710 GDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHTSLGL 531
G+ S+ + + R + W C P R L + T + +W +R G+
Sbjct: 133 GEETSYCFRDKSRVLLRDWYCRNSYPSPREKRELAEKTHLTVTQVSNWFKNRRQRDRAGV 192
Query: 530 PHCPHCLQFAEIKE--KVDRRTG---KSTEVNPKSIKSGDAA 420
P CL+ +E K+ R+T ++ NP + S AA
Sbjct: 193 PEPKDCLKDISEEEDLKLIRKTASKLSNSFHNPSDLSSYSAA 234
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -1
Query: 157 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 50
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,962
Number of Sequences: 27780
Number of extensions: 332739
Number of successful extensions: 879
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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