Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0210.Seq
         (895 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    24   1.8  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    24   1.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           24   1.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   5.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   7.5  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.9  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 745 SRPTSSKTPCHQYQKFK 695
           +RP + KTP +QY+ F+
Sbjct: 131 TRPQAKKTPPNQYENFQ 147


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 745 SRPTSSKTPCHQYQKFK 695
           +RP + KTP +QY+ F+
Sbjct: 131 TRPQAKKTPPNQYENFQ 147


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 745 SRPTSSKTPCHQYQKFK 695
           +RP + KTP +QY+ F+
Sbjct: 131 TRPQAKKTPPNQYENFQ 147


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 448 CLVSPVDNIWLCKHYFRAFTAIC 380
           C V+P +N   C     AF  IC
Sbjct: 72  CKVNPCENGGTCVDKINAFQCIC 94


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 326 VSDAVKRESLNDCRND-GTTDCSE 394
           VS  VKRE +++ +ND G T  S+
Sbjct: 39  VSQIVKREPMDEDKNDSGVTSGSD 62


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 263 LHHSTCVEINVRRILSTRIRKVSDAVKRESLNDCRNDGTTDCSE 394
           LH +T  ++ +    + +I   S++   ESL    N  T  C E
Sbjct: 215 LHEATLTDLALGENYTVQIMAKSESSPFESLKKSLNFRTPSCLE 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,843
Number of Sequences: 336
Number of extensions: 3334
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)