Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0210.Seq
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   1.2  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    29   1.2  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.7  

>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +1

Query: 118  VEQIKSNSSTKNCDVPDLFLILT-----LVSIPPNQLYLTCIDNCNMT 246
            ++ ++S  +T   D+ DL+ +L+     L+ +P  Q+YL C+D    T
Sbjct: 1149 LQLVQSAVNTNTADIDDLYRLLSKIPTNLLDLPMFQVYLGCVDTLIQT 1196


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/67 (22%), Positives = 33/67 (49%)
 Frame = -1

Query: 793 RFAYPNGXPGTASNRXSRPTSSKTPCHQYQKFKVISIVQIXISHTRFLTAEVASVN*SLQ 614
           +F  PNG P   +N+   P   +    +YQ++ +  +  +  S+T  + A+   +  ++Q
Sbjct: 422 KFDEPNGSPVLHANKIQVPFLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQ 481

Query: 613 TRSDFSH 593
           T +  +H
Sbjct: 482 TIALLAH 488


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +1

Query: 436 VILSIGQFSIYY---VLNKLQYIMYMIIVG*VTFALTTSFNILFXCXTXV*RVPFYERN 603
           VI + G    YY   +LN + Y+MY +I       L     +L  C T + R+P +  +
Sbjct: 3   VIANKGALWAYYCKRLLNSVTYMMYPLIRKRTMKKLLLIVGLLLACSTVMRRIPLFHES 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,389
Number of Sequences: 5004
Number of extensions: 53272
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)