Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0210.Seq
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41037-3|AAA82389.1|  378|Caenorhabditis elegans Hypothetical pr...    33   0.36 
U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian ...    29   4.5  
AL117207-9|CAB60400.1|  252|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U41037-3|AAA82389.1|  378|Caenorhabditis elegans Hypothetical
           protein T24C12.1 protein.
          Length = 378

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +1

Query: 112 YSVEQIKSNSSTKNCDVPDLFLILTLVSIPPNQLYLTCIDNCNMT 246
           YS  Q+  NSS + C V D  +  TL+  PP ++  TC D  N+T
Sbjct: 180 YSHIQVLHNSSKELCSVWDN-VYQTLICCPPEEVLQTCADFLNVT 223


>U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 1 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = -1

Query: 802 PGXRFAYPNGXPGTASNRXSRPTSSKTPCHQYQKFKVISIVQIXISHTRFLTAEVASVN* 623
           P  + A P G    A  R    T  ++   Q+Q FK + + Q  + +     A+    + 
Sbjct: 185 PQQQQAPPRGASPQARQRKRPNTDQQSETQQFQNFKSVKVEQDWMGNAHMSHAQKMPFHP 244

Query: 622 SLQTRSDFSH 593
           S  + S+F H
Sbjct: 245 SYPSPSEFGH 254


>AL117207-9|CAB60400.1|  252|Caenorhabditis elegans Hypothetical
           protein Y60A3A.15 protein.
          Length = 252

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 34  LISLMSYKTLMTKLSYLIFVNTK*KSYSVEQIKSNSSTKNCDVPDLFL 177
           L++ +  ++  +K   LIF+  + KSYS  Q++S    K C++   FL
Sbjct: 205 LLNQLHSESSKSKSGRLIFLLGELKSYSTRQLESLLDLKTCEIVISFL 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,403
Number of Sequences: 27780
Number of extensions: 299074
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)