Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0208.Seq
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0137 - 1082786-1082846,1083850-1084142,1084250-1084550,108...    28   8.6  

>03_01_0137 -
           1082786-1082846,1083850-1084142,1084250-1084550,
           1084792-1084862,1085008-1085115,1085205-1085279,
           1085298-1085440,1087848-1088097
          Length = 433

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
 Frame = +1

Query: 268 PLSPAGVIAKRPAPIALPNSCAXEWRMANCKR*YFVKIRVKFLLNQLIF*PIGRNRQNPL 447
           PL   G++   P+PI L ++      +      Y + +   FLL  +IF PIG    +  
Sbjct: 97  PLLTPGIVTC-PSPILLSSNMHIILPIRFMSSFYAIVVAT-FLLIGIIFVPIGLASLSAS 154

Query: 448 *--IKRIDRDRVECCSSLEQESILKNVDSNVKGRKTV 552
              ++ +DR    C S+L++   ++N D++    +T+
Sbjct: 155 QEIVELVDRYDTNCVSTLDKVGFIQNTDTDKTCTRTL 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,975,287
Number of Sequences: 37544
Number of extensions: 438169
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)