Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0208.Seq
         (887 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    24   5.4  
EF427621-5|ABO09853.1|   62|Anopheles gambiae tal-like protein A...    24   7.1  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   7.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   9.4  

>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 90  PLPKQTPLWTHRSHQKQQNNQQ 25
           PLP+++     +  Q+QQ NQQ
Sbjct: 183 PLPRRSSAQPQQQQQQQQRNQQ 204


>EF427621-5|ABO09853.1|   62|Anopheles gambiae tal-like protein AA
          protein.
          Length = 62

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 60 HRSHQKQQNNQQM 22
          H  HQ+QQN+Q+M
Sbjct: 27 HHHHQQQQNHQRM 39


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 637 PKGSPRFRA*RGKPANVGEKG 699
           PKG+P  R  +G+   +G++G
Sbjct: 108 PKGNPGLRGPKGERGGMGDRG 128


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 93  KPLPKQTPLWTHRSHQKQQNNQQMILY 13
           +P  +  P   H  H +Q +NQQ ILY
Sbjct: 415 RPKDRNQPATLH--HHQQVHNQQRILY 439


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,536
Number of Sequences: 2352
Number of extensions: 15158
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95507181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)