Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0208.Seq
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    30   1.8  
At1g43690.1 68414.m05019 ubiquitin interaction motif-containing ...    29   3.1  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   9.5  
At2g46550.1 68415.m05807 expressed protein                             28   9.5  

>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 494 WNK--SPY*RTWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVK 622
           WN   S Y  T TPTS   G+K +++A  ++V   P  V W RG ++
Sbjct: 768 WNSCTSSY-TTATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVME 813


>At1g43690.1 68414.m05019 ubiquitin interaction motif-containing
           protein contains Pfam profile PF02809: Ubiquitin
           interaction motif
          Length = 599

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +2

Query: 428 EIGKIPYKSKE*TEIGLSVVPVWNKSPY*RTWTPTSKGEKPSIRAMAHYVNHHP 589
           E G +P +    T++ +SV P W    Y     P S  EK S       V H P
Sbjct: 522 EGGMVPMQRPRLTKLNVSVPPKWTPEEYMTCALPPSSSEKDSEVNQPKPVQHAP 575


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 524 TPTSKGEKPSIRAMAHYVNHHP 589
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At2g46550.1 68415.m05807 expressed protein
          Length = 397

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 87  LPKQTPLWTHRSHQKQQNNQQ 25
           LP  T LW+H  HQ Q N +Q
Sbjct: 81  LPHNTRLWSHPHHQFQVNKKQ 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,158,205
Number of Sequences: 28952
Number of extensions: 331725
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)