Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0207.Seq
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.1  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 528 RHLKDASPVLDHAICKSYPDSSKLTTSDARP 620
           RH+K A PV+  + C     S++L      P
Sbjct: 68  RHIKGAIPVVSLSTCSMLCGSTQLWPQPTGP 98


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 266 LAPDLPSNCSSLKYLKCTHSDYEA 337
           +A ++  N SSL+YL   ++D  A
Sbjct: 481 VALEVAGNISSLRYLNLDYNDLSA 504


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 479 P*QPW*SQKLHRKLIRQTFER 541
           P  PW   +  RK  RQT+ R
Sbjct: 231 PLYPWMRSQFERKRGRQTYTR 251


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 479 P*QPW*SQKLHRKLIRQTFER 541
           P  PW   +  RK  RQT+ R
Sbjct: 233 PLYPWMRSQFERKRGRQTYTR 253


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,766
Number of Sequences: 336
Number of extensions: 3312
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)