Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0207.Seq
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    27   1.8  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    26   5.6  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   7.5  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   7.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   9.9  

>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 366 VTTSPCREWVXCAPAAFLGCGSRFSGSLSGIEP*FPVTRDNHGSRRNYIES**GRHLKDA 545
           +TT   ++ +    A  L  G+RF G+L G    F    D   S R +++S   R     
Sbjct: 432 ITTRAGKDLISSLVAGLLTIGTRFGGALDGAAQEFSKAYDAGLSPRAFVDS--CRKANKL 489

Query: 546 SPVLDHAI-CKSYPD 587
            P + H I  ++ PD
Sbjct: 490 IPGIGHRIKSRNNPD 504


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -1

Query: 533 MSALSTFDVVSATTMVVTGNGESGFDSGEGA*ETATTSKEGSRRAXYPLP 384
           MSA +T  VV   T  +TG  E  F        TA T+ +G R +  PLP
Sbjct: 1   MSATATTTVVEPPTTTLTGATEPPF--------TAYTTSQGLRVSPVPLP 42


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 502 LRLPWLSRVTGNQGSIPEREPEKRLP 425
           LRL +L +   NQ S  E++ EKR+P
Sbjct: 283 LRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 496 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQXTHSRHGEVVTKN 359
           +P +S V  +   IPER+  + L  P         H    EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 364 SSLPPRAGSG*XARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTSK 516
           SSLPP A      +  PS   +  +  P P   P  P P++   VA T+S+
Sbjct: 169 SSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP--PPPLSQAPVANTSSR 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,966
Number of Sequences: 5004
Number of extensions: 54447
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)