Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0207.Seq
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0861 + 8153108-8153266,8154633-8155136                           30   1.5  
09_01_0019 + 403078-404211                                             30   1.5  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    28   7.7  

>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 349 PYRYFSSLPPRAGSG*XARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 504
           P    SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 94  PRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>09_01_0019 + 403078-404211
          Length = 377

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 473 GESGFDSGEGA*ETATTSKEGSRRAXYPLPARGGSDEK*RYG 348
           G S  DSG GA ++A   K  SRR  +      GSD   R+G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 558  DHAICKSYPDSSKLTTSDARPFRRLVLI**KHSSHHW 668
            D++  KSYPDS    T    PF   +L   +H  H W
Sbjct: 3951 DNSDPKSYPDSVTRLTRGKNPFALSILKQVEHKLHGW 3987


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,707,342
Number of Sequences: 37544
Number of extensions: 415220
Number of successful extensions: 1205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)