Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0207.Seq
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   8e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.052
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.37 
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_40635| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)                   30   1.5  
SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   2.0  
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  29   3.4  
SB_27873| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  29   4.5  
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_1429| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_8531| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   7.9  
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    28   7.9  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 421 DVVAVSQAPSPESNPDSPLPVTTM 492
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +1

Query: 430 AVSQAPSPESNPDSPLPVTTM 492
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 431 PFLRLPLRNRTLIPRYP 481
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -3

Query: 255 IPAPIAYTKIVAVKKL 208
           IPAPIAY K+VAVKKL
Sbjct: 38  IPAPIAYIKVVAVKKL 53


>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -3

Query: 255 IPAPIAYTKIVAVKKL 208
           IPAPIAY K+VAVKKL
Sbjct: 83  IPAPIAYIKVVAVKKL 98


>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -3

Query: 255 IPAPIAYTKIVAVKKL 208
           IPAPIAY K+VAVKKL
Sbjct: 11  IPAPIAYIKVVAVKKL 26


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -3

Query: 255 IPAPIAYTKIVAVKKL 208
           IPAPIAY K+VAVKKL
Sbjct: 75  IPAPIAYIKVVAVKKL 90



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 347 TLTRPRNRNEYTLNILTRNNWRASLVPAAAV 255
           T  +   R    ++++ R +WRASLVPAAAV
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAV 74


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -3

Query: 255 IPAPIAYTKIVAVKKL 208
           IPAPIAY K+VAVKKL
Sbjct: 28  IPAPIAYIKVVAVKKL 43


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -3

Query: 255 IPAPIAYTKIVAVKKL 208
           IPAPIAY K+VAVKKL
Sbjct: 15  IPAPIAYIKVVAVKKL 30


>SB_40635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 288 LEGKSGASSRGIPAPIAYTKIVAVKKL 208
           +EGKSGASSRG  +  +  K+ + KKL
Sbjct: 1   MEGKSGASSRGYSSSNSVYKVCSFKKL 27


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 630 IDGRASRPKSLILMNLDNFCRSHGQVPATHLSNVCLINFRCS 505
           I+ R SR +S   + +D+   SH     TH S  CL N RC+
Sbjct: 13  INNRTSRCESANRVLVDHVIASHNVTNPTHCSMNCLSNERCA 54


>SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)
          Length = 918

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 214 FNRNNFSIRYWS-WNTAAAGTRLALQLFLVKIFKVYSFRLRGL 339
           +    F+I  W   +T   G+R  L+ F++  +KVY  RL GL
Sbjct: 714 YTLGRFTIHDWKVHDTHLEGSRYTLERFMIHPWKVYDTRLEGL 756


>SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 392

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +1

Query: 61  RHSPKSTATRILILNRRFLERR---LTDDMLRKRVSITADACTDSAAHKCNYELFNRNNF 231
           RH+   T      L  R+L+R    + +D L K+     D   DS    C++  FNR++ 
Sbjct: 328 RHTLSQTTFHESELPNRYLQRMHKSVLNDRLAKKTGKRPDTEVDSKRSNCSHATFNRDSL 387

Query: 232 SI 237
            I
Sbjct: 388 KI 389


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +1

Query: 37   QSKIVGPPRHSPKSTATRI--LILNRRFLER--RLTDDMLRKRVSITADACTDSAAHKCN 204
            +S+ VG P  S KST  R+  L+   R LER   L  + L KR   TA    +S  ++  
Sbjct: 1109 ESRDVGKPESSSKSTGDRVAGLVSEARVLERFSVLQAETLYKRACDTA-LSAESPDNRAT 1167

Query: 205  YELF 216
            Y+ F
Sbjct: 1168 YKAF 1171


>SB_27873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = -2

Query: 550 GDASFKCLPYQLSM 509
           GD SFK LPYQLSM
Sbjct: 91  GDVSFKFLPYQLSM 104


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 575 FADRMVKYRRRIFQMSALSTFDVVSATTMVVTGNG 471
           FAD + K  +   ++SA S+  VV+ TT   TG G
Sbjct: 221 FADEISKANKVATKISASSSVSVVTVTTTTTTGRG 255


>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = -2

Query: 550 GDASFKCLPYQLSM 509
           GD SFK LPYQLSM
Sbjct: 685 GDVSFKFLPYQLSM 698


>SB_1429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = -2

Query: 550 GDASFKCLPYQLSM 509
           GD SFK LPYQLSM
Sbjct: 65  GDVSFKFLPYQLSM 78


>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 281 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL 376
           PSN  CS L YL+C          +R+++F H L
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLL 556


>SB_8531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 436 SQAPSPESNPDSPLPVTTMVVAETTSKVDKADI*KMRRRYLTMRSAKVIQIHQ 594
           ++ P+P+  P  P    +M+  E +  ++ +     RRR  T+R+ K I  +Q
Sbjct: 34  TRVPAPKQRPRMP-NTESMICKENSDHINLSKAQSQRRRKATLRALKPIHCNQ 85


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 412 PSLDVVAVSQAPSPESNPDSPLP 480
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +2

Query: 515  KLIRQTFERCVAGT*PCDLQKLSRFIKINDFGREALPSIGFDLIKALIPSL 667
            K+  +  E C+A     D+ K    +++   G ++    G DL+  ++P L
Sbjct: 1557 KIPSENMECCLATDNDLDVTKWIELLQLESCGYDSTEQSGLDLLNGIVPQL 1607


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,002,801
Number of Sequences: 59808
Number of extensions: 447701
Number of successful extensions: 1186
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)