Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0207.Seq
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 609 PKSLILMNLDNFCRSHGQVPAT 544
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 250 WNTAAAGTRLALQLFLVKIFKVYSFRLRGLVRVPYRY 360
           WN A     LA+ LFL  +  V+   L  L  V  RY
Sbjct: 39  WNLATDRAGLAILLFLFSVATVFGNTLVILAVVRERY 75


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 445 PSPESNPDSPLPVTTMVVAETTSKVD 522
           PS E+  D P  V   +   + SK+D
Sbjct: 49  PSGENATDGPAVVRVNIFVRSISKID 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,784
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)