Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0207.Seq
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    30   1.6  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    29   2.1  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   3.7  
At4g24150.1 68417.m03465 expressed protein ; expression supporte...    27   8.5  

>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
           (Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
           to mitochondrial sorting protein 1 (MSP1) protein
           (TAT-binding homolog 4) (Swiss-Prot:P28737)
           [Saccharomyces cerevisiae]
          Length = 1265

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 421 DVVAVSQAPSPESNPDSPLPVTTMVVAETTSKVDKADI*KMRRRYLTMRSAKVI-QIHQN 597
           DV  +  +P  ++NP+  +  T  V  E  +  DK+     ++R L    AK++ Q  QN
Sbjct: 98  DVPVMENSPETDANPEVEVLATPTVAGEAVADADKSK--AAKKRALKAPWAKLLSQYSQN 155

Query: 598 *RLRTRGP 621
                RGP
Sbjct: 156 PHRVIRGP 163


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 266 LAPDLPSNCSSLKYLKCTHSDYE 334
           L+ DL +NCSSL+YL  +H+  E
Sbjct: 164 LSDDLFNNCSSLRYLSLSHNHLE 186


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 403 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 504
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At4g24150.1 68417.m03465 expressed protein ; expression supported
           by MPSS
          Length = 493

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 451 EREPEKRLPHPRKAAGAQXTHSRHGEVVTKNNDTGLL 341
           ER   K  P  RK   +    S H ++ T  NDT  L
Sbjct: 271 ERHTHKSRPRSRKHVESSHQSSHHNDIRTAKNDTSQL 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,331,711
Number of Sequences: 28952
Number of extensions: 303505
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)