Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0206.Seq
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    66   4e-12
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   2.5  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   4.4  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.8  
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    26   5.8  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    26   7.6  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 31/82 (37%), Positives = 51/82 (62%)
 Frame = -2

Query: 503  LEDMTIWQKHFQSWPKKMPVCTHAEREKTAAVILMASLLDRPVHICHVARKEEILIIKAA 324
            ++ +T    HF  WP    V T A+    A+++L+ASL +R +HI +V+ K+++ +I  A
Sbjct: 1639 IDHVTAVASHFNVWPDTQTVMTDAKSTTLASLLLLASLHNRRIHITNVSSKDDLNLIVLA 1698

Query: 323  KERGVKVTCEVCPHHLFLNSND 258
            K+R + VT +V  + LFLN ND
Sbjct: 1699 KQRSLPVTFDVSVYSLFLNQND 1720



 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 24/68 (35%), Positives = 40/68 (58%)
 Frame = -1

Query: 216  LCSPEDQAELWRNISIIDVFATDHAPHTVEEKNSENPPPGYPGLETILPLLLNAVHQGRL 37
            L + +DQ E+W  +S ID F+    P  + +        G+ G+   +PLLL AV++GRL
Sbjct: 1727 LPTADDQVEIWNKLSYIDCFSIGSIPSRLAKFVGNTAFTGF-GVREAIPLLLTAVNEGRL 1785

Query: 36   TIEDLLCR 13
            T++D++ R
Sbjct: 1786 TLKDVVDR 1793



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 712  TMICAMP-NTNPSIVDRTAFDYASTLARVSARCDYALYVGASSTNYDTICELAPQAAAL 539
            TM   +P +T+ ++ D+ +      LA   A CDY   V ASSTN  TI EL  ++  L
Sbjct: 1570 TMARFLPFSTSSTLADKDSLSAVKKLALDHAHCDYNFSVIASSTNEVTISELTSESGCL 1628


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 484 QIVISSNRKL*KFHLSTSLELQLAEPVHILCHNLSRKHRRTKHNRI 621
           +++  S R L +F LSTSLE Q+  P  +   NLS    R   N I
Sbjct: 728 ELLKKSTRYLLQFGLSTSLEQQIPTPYWLAPLNLSCTDYRFLENLI 773


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 142 CMVCGKNINDTYISPKFCLVFRTT*YWTYFCSPFSNFV-MSLLFKN 276
           C V  K I +  I+      F  T YW  F     +F+   LLF+N
Sbjct: 16  CTVVEKCITNLLITTILLCFFNATTYWKLFFGAMFDFIHYQLLFRN 61


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 386 DRPVHICHVARKEEILIIKAAKERGVKVTCEVCPHHLFLNSNDITKLE 243
           +RP H C VA++E I+     K+R  K   E     L    + + K++
Sbjct: 39  NRPCHNCFVAKRECIIAGDNRKKRHTKTYVEALESQLANMESTLAKIK 86


>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 823 VKLPGFIDVHVHVRE 779
           +K+PG  D+HVH+R+
Sbjct: 3   LKIPGLADMHVHLRQ 17


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 204 EDQAELWRNISIIDVFATDHAPHTVEEKNS 115
           ED   +W N+++   F    A H V  KN+
Sbjct: 179 EDGVSIWHNVTLGSTFKDSGARHPVIRKNA 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,469
Number of Sequences: 5004
Number of extensions: 68740
Number of successful extensions: 202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)