Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0206.Seq
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1612 + 34773218-34773414,34773655-34773738,34773871-347739...    38   0.010
01_07_0201 + 41956938-41957022,41957123-41957214,41957460-419575...    29   4.6  
03_01_0325 + 2529875-2529922,2530181-2530279,2530958-2531055,253...    29   6.1  
04_04_0028 - 22243272-22243577,22244564-22244713,22244919-222456...    28   8.1  

>04_04_1612 +
           34773218-34773414,34773655-34773738,34773871-34773944,
           34774312-34774388,34774491-34774527,34774691-34774776,
           34775048-34775107,34775216-34775361,34775780-34775906,
           34776164-34776319,34776409-34776519,34776725-34776835,
           34777040-34777138,34777316-34777444
          Length = 497

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = -2

Query: 377 VHICHVA-RKEEILIIKAAKERGVKVTCEVCPHHLFLNSNDI 255
           +HI H++  K  + ++K AK+ G +V+ E CPH+L  ++ ++
Sbjct: 280 IHIVHLSDAKTSLGLLKDAKQNGARVSVETCPHYLAFSAEEV 321


>01_07_0201 +
           41956938-41957022,41957123-41957214,41957460-41957561,
           41957691-41957763,41958297-41958403,41958476-41958599,
           41959004-41959198,41959515-41959600,41959695-41959802,
           41960171-41960266,41960347-41960445,41960562-41960636,
           41961040-41961171,41961252-41961367,41961935-41962109
          Length = 554

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 832 GNIVKLPGFIDVHVHVREPGANI 764
           GN+V LPGFID HVH  + G  +
Sbjct: 73  GNVV-LPGFIDSHVHFIDGGLQL 94


>03_01_0325 +
           2529875-2529922,2530181-2530279,2530958-2531055,
           2531945-2532031,2532652-2532684,2532813-2532890,
           2533059-2533183,2533267-2533349,2533436-2533527,
           2533611-2533680,2533760-2533829,2533919-2534073
          Length = 345

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 320 ERGVKVTCEVCPHHLFLNSNDITKLEKGEQKYVQYYVVLKTKQNF 186
           ER +   C VC  +LF ++ DI+ L  G   +++    +++ Q F
Sbjct: 205 ERAMHHNCPVCFEYLFDSTKDISALHCGHTIHLECLYEMRSHQQF 249


>04_04_0028 -
           22243272-22243577,22244564-22244713,22244919-22245656,
           22247233-22247331,22247541-22247933,22248806-22248961
          Length = 613

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 117 SENPPPGYPGLETILPLLLNAVHQGRLTIEDLLC 16
           S  PP  + G   +  L LN VH  R  +E++LC
Sbjct: 361 SLQPPSWFGGFPNLRKLELNLVHVTRKELENMLC 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,957,767
Number of Sequences: 37544
Number of extensions: 440609
Number of successful extensions: 983
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)