Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0206.Seq
(840 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 129 2e-30
SB_5794| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 2e-25
SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_58019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_29282| Best HMM Match : Vicilin_N (HMM E-Value=5) 29 4.7
SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051) 29 4.7
SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 129 bits (312), Expect = 2e-30
Identities = 55/98 (56%), Positives = 71/98 (72%)
Frame = -2
Query: 539 KDVLK*NFYNFLLEDMTIWQKHFQSWPKKMPVCTHAEREKTAAVILMASLLDRPVHICHV 360
K L F L+D+TIW KH ++WP MP+ HAE TAA++L+A L DRPVHI HV
Sbjct: 1866 KMYLNETFTTLRLDDLTIWMKHLENWPLHMPIVCHAEGRTTAAILLLAELADRPVHIAHV 1925
Query: 359 ARKEEILIIKAAKERGVKVTCEVCPHHLFLNSNDITKL 246
ARKEEI++I+AAKERG+ VTCEV PHHLF+ +D ++
Sbjct: 1926 ARKEEIMVIRAAKERGLAVTCEVAPHHLFMTKDDAARI 1963
Score = 117 bits (281), Expect = 1e-26
Identities = 59/106 (55%), Positives = 71/106 (66%)
Frame = -3
Query: 826 IVKLPGFIDVHVHVREPGANIKGRF*DLLPQXHWLVVLTMICAMPNTNPSIVDRTAFDYA 647
IV+LPG IDVHVH+REPGA K F +TM+ AMPNTNP +VD +F+ A
Sbjct: 1771 IVRLPGLIDVHVHLREPGATHKEDFASGTAAA-LAGGITMVLAMPNTNPPLVDEESFNLA 1829
Query: 646 STLARVSARCDYALYVGASSTNYDTICELAPQAAALKMYLNETFTT 509
L ARCDYALY+GA TNY + ++A +AA LKMYLNETFTT
Sbjct: 1830 KKLGTAGARCDYALYLGAGPTNYTMLKDIAHRAAGLKMYLNETFTT 1875
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = -1
Query: 252 KIGKGRAKVCPVLCSPEDQAELWRNISIIDVFATDH 145
+IG+ +V P L + EDQ LW N+ ID FATDH
Sbjct: 1962 RIGESWIRVKPPLVTAEDQMALWDNMEYIDCFATDH 1997
>SB_5794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 113 bits (271), Expect = 2e-25
Identities = 51/75 (68%), Positives = 59/75 (78%)
Frame = -1
Query: 252 KIGKGRAKVCPVLCSPEDQAELWRNISIIDVFATDHAPHTVEEKNSENPPPGYPGLETIL 73
+IG+ +V P L + EDQ LW N+ ID FATDHAPHT+EEKNS N PPG+PGLET+L
Sbjct: 32 RIGESWIRVKPPLVTAEDQMALWDNMEYIDCFATDHAPHTIEEKNSTNSPPGFPGLETML 91
Query: 72 PLLLNAVHQGRLTIE 28
PLLL AVHQGRLTIE
Sbjct: 92 PLLLTAVHQGRLTIE 106
Score = 50.8 bits (116), Expect = 1e-06
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -2
Query: 344 ILIIKAAKERGVKVTCEVCPHHLFLNSNDITKL 246
I++I+AAKERG+ VTCEV PHHLF+ +D ++
Sbjct: 1 IMVIRAAKERGLAVTCEVAPHHLFMTKDDAARI 33
>SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 35.9 bits (79), Expect = 0.041
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 168 IDVFATDHAPHTVEEKNSE--NPPPGYPGLETILPLLLNAVHQGRLTIEDLL 19
I +DH PH K + PG GLET+LPL L V Q L++ L+
Sbjct: 379 IQAICSDHQPHDPAAKQAPFAATEPGISGLETLLPLGLMLVEQKLLSLSQLI 430
Score = 35.1 bits (77), Expect = 0.071
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -2
Query: 434 AEREKTAAVILMASLLDRPVHICHVARKEEILIIKAAKERGVKVTCEVCPHHLFLNSNDI 255
AE + A +L+ H ++ + + ++ A++RG+ +T +V HHL L ++
Sbjct: 289 AETVELARCLLLVEQTGVRAHFGQLSCERSVRMVMDARKRGLNITADVAIHHLLLTDENV 348
Query: 254 T 252
T
Sbjct: 349 T 349
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 826 IVKLPGFIDVHVHVREPGANIKGRF*DLLPQXHWLVVLTMICAMPNTNPSIVDRTA 659
+V PG +D+ H+REPG KG + T+ A P T ++D A
Sbjct: 130 LVVTPGLVDLCAHLREPGLTQKGNIASETAAAAAAGITTL--ATPPTTAPVIDTPA 183
>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -2
Query: 440 THAEREKTAAVILMASLLDR---PVHICHVARKEEILIIKAAKERGVKVTCEVCPHHLFL 270
T E + A+ ++ L D P HI H++ + I++A+ G+ +T E H+L L
Sbjct: 162 TRPESMENKAIEMVIHLCDHYRVPCHIVHLSSGSALDSIRSARSSGIPLTVETTHHYLSL 221
Query: 269 NSNDI 255
+ ++
Sbjct: 222 TAEEV 226
Score = 29.1 bits (62), Expect = 4.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 826 IVKLPGFIDVHVHVREPG 773
+V +PG +D HVH+ +PG
Sbjct: 55 LVIMPGVVDSHVHINQPG 72
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 246 GKGRAKVCPVLCSPEDQAELWRNISI--IDVFATDHAPHTVEEK 121
G + K CP + +Q LW + ID+ +DH+P T + K
Sbjct: 229 GATQYKCCPPIRDRSNQEVLWNAVKFRDIDLVVSDHSPCTPDLK 272
>SB_58019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 354 SCYVTNVYRPIKERCH*NDSGGFLTLCMSTNR 449
SC V N+ I+ERC +DSG L L T +
Sbjct: 18 SCTVVNLLDNIRERCGFSDSGNILDLTDQTEK 49
>SB_29282| Best HMM Match : Vicilin_N (HMM E-Value=5)
Length = 106
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 417 RRCHFNGISP*SACTHLSRSTKRRNINYQSRKRK 316
RRCH ++P CT+ + TK+ I Y+ K K
Sbjct: 10 RRCHIRHLNPQVVCTYGDKCTKQTRI-YRGEKAK 42
>SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051)
Length = 717
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 394 DAIKMTAAVFSRSA*VQTGIFLGQLWKCFCQIVISSNR 507
DAIK A + R+ V+ G L L KC+ I +S+N+
Sbjct: 57 DAIKEKADIRKRAPPVEEGEVLKPLAKCYTDIEVSTNK 94
>SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 720 TSQCXCGNRSQNLPLMLAPGSRT*TCTSMKPGNLT 824
TS CG S+N P MLA CT +K G L+
Sbjct: 75 TSPLSCGQSSKNSPAMLAGAGA--VCTGLKNGRLS 107
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 624 PDAIMLCTSVLPRQIMTQYVNWLR 553
PDA TS++PR T YV W R
Sbjct: 1250 PDAAPAITSIVPRDAYTIYVAWTR 1273
>SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 548 SLRSQFTYCVIICRGSTDVQSIIA 619
SLR+Q+ Y +I+C STD+ S A
Sbjct: 501 SLRTQYGYGIILCALSTDMASFFA 524
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,633,109
Number of Sequences: 59808
Number of extensions: 530373
Number of successful extensions: 1405
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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