Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0206.Seq
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    99   4e-21
U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U97015-5|AAB52344.2|  362|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    29   5.4  
U97003-5|AAB52272.1|  353|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
            D2085.1 protein.
          Length = 2198

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 42/95 (44%), Positives = 61/95 (64%)
 Frame = -2

Query: 539  KDVLK*NFYNFLLEDMTIWQKHFQSWPKKMPVCTHAEREKTAAVILMASLLDRPVHICHV 360
            K  L   F    +++++ W KH  ++P   P+  HAE++  AA++ MA + +R VHI HV
Sbjct: 1568 KMYLNETFSTLKMDNISDWAKHLSAFPANRPIVCHAEKQTLAAILCMAQMANRAVHIAHV 1627

Query: 359  ARKEEILIIKAAKERGVKVTCEVCPHHLFLNSNDI 255
            A  +EI ++K AK+RG  VTCEVCPHHLFL   D+
Sbjct: 1628 ATADEINLVKEAKQRGWNVTCEVCPHHLFLIEEDL 1662



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 49/107 (45%), Positives = 65/107 (60%)
 Frame = -3

Query: 829  NIVKLPGFIDVHVHVREPGANIKGRF*DLLPQXHWLVVLTMICAMPNTNPSIVDRTAFDY 650
            ++ +LPG +D+HVHVREPGA  K  +     +      +T I AMPNT+P +VD  +F  
Sbjct: 1472 SLKRLPGMVDIHVHVREPGATHKEDW-ATCSKAALAGGVTTILAMPNTSPVLVDTDSFYQ 1530

Query: 649  ASTLARVSARCDYALYVGASSTNYDTICELAPQAAALKMYLNETFTT 509
               LA   +  DYALY+GA+  N     E A +AA LKMYLNETF+T
Sbjct: 1531 TEQLASAKSVVDYALYIGATPNNSKFAAEFADKAAGLKMYLNETFST 1577



 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
 Frame = -1

Query: 240  GRAKVCPVLCSPEDQAELWRNISIIDVFATDHAPHTVEEKNSENP--PPGYPGLETILPL 67
            G  +V P L  PED+  LW N+  ID FATDHAPHT  EK  ++   PPG+PG+E +LPL
Sbjct: 1665 GIREVRPRLVKPEDRQALWDNMEYIDCFATDHAPHTWAEKTGKDGKIPPGFPGVEYMLPL 1724

Query: 66   LLNAVHQGRLTIEDLLCRI 10
            LL AVH G+LT+++L  R+
Sbjct: 1725 LLTAVHDGKLTMKELTDRM 1743


>U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical
           protein B0222.1 protein.
          Length = 285

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 177 ISIIDVFATDHAPHTVEEKNSENPPPGYPGLE 82
           ++ + VFAT    HT    N   PPPG+ G +
Sbjct: 213 VTEVPVFATTTTTHTFTTNNGPPPPPGFQGFQ 244


>U97015-5|AAB52344.2|  362|Caenorhabditis elegans Hypothetical
           protein F48C1.2 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 413 RRFSHALHEYKQAFFWANFGNVSAKLSYPLTESCKSF 523
           R FS  L ++++AFF+ N  N ++K  Y     CK+F
Sbjct: 152 RSFSGVLLKFQEAFFFVNKLNYTSKSIYLDGHGCKNF 188


>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
           protein K10E9.1 protein.
          Length = 1451

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -2

Query: 479 KHFQSWPKKMPVCTHAEREKTAAVILMASLLDRPVHICHVARKEEILI 336
           +HF  WP+ + +    +     AV   A+L ++ V +C  + + ++L+
Sbjct: 398 RHFSKWPQNLTLPIQKQTINCMAVFFEANLDNQLVDLCQWSDRRKVLV 445


>U97003-5|AAB52272.1|  353|Caenorhabditis elegans Hypothetical
           protein F47C10.7 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 420 NRRCHFNGISP*SACTHLSRSTKRRNINYQSRKRKRC 310
           N  CH  G+   +AC    R      I YQ R  K+C
Sbjct: 23  NASCHNYGVLTCNACKMFFRRVVIEQITYQCRNWKKC 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,075,316
Number of Sequences: 27780
Number of extensions: 403913
Number of successful extensions: 987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)