Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0206.Seq
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   0.87 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   0.87 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   2.0  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.5  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 338 IIKAAKERGVKVTCEVCPHHLFLNSNDITKLEKGEQKYVQYYV 210
           ++ AA E+G+K+  +  P+H            K  + Y  YY+
Sbjct: 105 LVSAAHEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYI 147


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 338 IIKAAKERGVKVTCEVCPHHLFLNSNDITKLEKGEQKYVQYYV 210
           ++ AA E+G+K+  +  P+H            K  + Y  YY+
Sbjct: 105 LVSAAHEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYI 147


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 437 HAEREKTAAVILMASLLDRPVHICHVARKEEILI 336
           +AE+   +  + + S++  P+H      KEEIL+
Sbjct: 34  NAEKTLCSGQVCLGSVMQLPIHGTEPRSKEEILL 67


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 338 IIKAAKERGVKVTCEVCPHHLFLNSNDITKLEKGEQKYVQYYV 210
           +++ AK  G+KV  +  P+H         K  +  + Y +YYV
Sbjct: 105 LVRRAKSLGLKVILDFVPNHSSHEHPWFKKSVQRIKPYDEYYV 147


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 258 HYKIGKGRAKVCPVLCSPEDQAELW 184
           HY   + R ++   LC  E Q ++W
Sbjct: 31  HYLTRRRRIEIAHALCLTERQIKIW 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,774
Number of Sequences: 438
Number of extensions: 5062
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)