Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0205.Seq
         (927 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8GRA2 Cluster: Collagen binding protein; n=8; Streptoc...    34   5.9  
UniRef50_Q8IAV2 Cluster: Putative uncharacterized protein PF08_0...    34   5.9  
UniRef50_Q22TR1 Cluster: Putative uncharacterized protein; n=12;...    34   5.9  
UniRef50_UPI00006CBB54 Cluster: hypothetical protein TTHERM_0056...    33   7.8  

>UniRef50_Q8GRA2 Cluster: Collagen binding protein; n=8;
           Streptococcus pyogenes|Rep: Collagen binding protein -
           Streptococcus pyogenes
          Length = 757

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 126 KTYLIIDGDQKNRDLRELEETYTANVKNEF--FNVLSQKSYQK 4
           K Y IIDG Q     +E+ E Y+    N+F  F+VL+ ++Y K
Sbjct: 368 KVYTIIDGKQIENPNKEIVEPYSVEAYNDFEEFSVLTTQNYAK 410


>UniRef50_Q8IAV2 Cluster: Putative uncharacterized protein
           PF08_0090; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF08_0090 - Plasmodium
           falciparum (isolate 3D7)
          Length = 1222

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = -1

Query: 228 SFHNLAIYSLHIIMTFIYY-YV*HKILTVRTNKTYKTYLIIDGDQKNRDLRELEETYTAN 52
           +FH   +Y L +   F Y+ +V HK+  +      K YL ++ +  N  + E + TYT +
Sbjct: 509 NFHICFLYPLFVTYFFYYHLFVKHKMDNLMKKGVKKVYLDMNKETTNFYMEESKNTYTGD 568

Query: 51  VKNEFFNVLSQKSYQKQ 1
            K   +N   +++ +K+
Sbjct: 569 EK--IYNTNEEQNMKKE 583


>UniRef50_Q22TR1 Cluster: Putative uncharacterized protein; n=12;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1783

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 17/71 (23%), Positives = 38/71 (53%)
 Frame = -1

Query: 255 FYLGNVDKYSFHNLAIYSLHIIMTFIYYYV*HKILTVRTNKTYKTYLIIDGDQKNRDLRE 76
           FYLG   + S   L   ++++IM  IY  + ++ L +R++K + ++  +   +K+  L +
Sbjct: 553 FYLGIYQQGSKLILMDRNIYVIMAIIYNLLEYQHLLIRSSKKFLSFQFLKFKEKSNKLSK 612

Query: 75  LEETYTANVKN 43
             + Y  N+ +
Sbjct: 613 YNKKYIKNISS 623


>UniRef50_UPI00006CBB54 Cluster: hypothetical protein
           TTHERM_00564330; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00564330 - Tetrahymena
           thermophila SB210
          Length = 524

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 126 KTYLIIDGDQKNRDLRELEETYTANVKNEFFNVLSQKSYQK 4
           +T +II G Q+N+    L E Y  N+ N F +  +Q S QK
Sbjct: 67  ETRIIIFGGQENKTNNSLNEIYQLNLGNSFISTFNQISVQK 107


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,881,834
Number of Sequences: 1657284
Number of extensions: 11527061
Number of successful extensions: 22233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22229
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 85260991088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)