Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0205.Seq
         (927 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        30   3.1  
SB_16838| Best HMM Match : TolA (HMM E-Value=2)                        29   5.3  

>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 150 TVRTNKTYKTYLIIDGD--QKNRDLRELEETYTANVKNEFFNVLSQKSYQK 4
           T   NK  +T   ++    +K+  LR+LEE Y AN+KN    V + +S  K
Sbjct: 335 TPEVNKMRRTIADLEESLKRKSESLRKLEEEYQANMKNSQNEVENMESKMK 385


>SB_16838| Best HMM Match : TolA (HMM E-Value=2)
          Length = 371

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -1

Query: 162 HKILTVRTNKTYKTYLIIDGDQKNRDLRELEETYTANVKNEFFNVLSQKSYQKQ 1
           HK+ T  TNK YK ++++   + N +  +L++      +   +N   Q+  ++Q
Sbjct: 8   HKLQTEDTNKDYKHHILLSCSRNNSNNVQLQQQKRQQQQKRTYNYDIQQQQKRQ 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,335,724
Number of Sequences: 59808
Number of extensions: 336212
Number of successful extensions: 569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)