Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0204.Seq
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   113   2e-26
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   113   2e-26
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   2.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   4.6  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   4.6  

>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  113 bits (273), Expect = 2e-26
 Identities = 51/76 (67%), Positives = 61/76 (80%)
 Frame = +3

Query: 48  MGDIEDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 227
           M + E   FE G++GAS TFPMQ SALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 228 VGIDIFNGKSXKISVP 275
           V +DIFNG+  +   P
Sbjct: 61  VALDIFNGRKYEDMSP 76



 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 41/84 (48%), Positives = 62/84 (73%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 433
           KY D+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G+LG ++   
Sbjct: 70  KYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEG 128

Query: 434 FDSGKELLCTVLKSCGEXCVIAVK 505
           F+ GK+L+ TV+ + GE   +A +
Sbjct: 129 FEEGKDLIITVVSAMGEEIALACR 152


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  113 bits (273), Expect = 2e-26
 Identities = 51/76 (67%), Positives = 61/76 (80%)
 Frame = +3

Query: 48  MGDIEDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 227
           M + E   FE G++GAS TFPMQ SALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 228 VGIDIFNGKSXKISVP 275
           V +DIFNG+  +   P
Sbjct: 61  VALDIFNGRKYEDMSP 76



 Score = 97.9 bits (233), Expect = 2e-21
 Identities = 41/84 (48%), Positives = 62/84 (73%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 433
           KY D+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G+LG ++   
Sbjct: 70  KYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEEG 128

Query: 434 FDSGKELLCTVLKSCGEXCVIAVK 505
           FD G++L+ TV+ + GE   +A +
Sbjct: 129 FDEGRDLIITVVSAMGEETALACR 152


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 507  ALTAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            +LTA+  S+P   S+V N+S P++ S  V    P + S ++ SS
Sbjct: 2570 SLTALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSS 2613



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  V    P + S +L SS
Sbjct: 1420 TVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSSVLNSS 1461



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSSRRSPLSAI 358
            T +  S+P   STV N+S P++ S  +    P + S +L SS     S+I
Sbjct: 1192 TVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSI 1241



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  + +  P + S +L SS
Sbjct: 1372 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 1413



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  + +  P + S +L SS
Sbjct: 2212 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 2253



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  + +  P + S +L SS
Sbjct: 2500 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 2541



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  + +  P + S +L SS
Sbjct: 2800 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 2841



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501 TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
           T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 484 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 525



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501 TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
           + +  S+P   STV N S P++ S  V +  P + S +L SS
Sbjct: 820 SVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSSVLNSS 861



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 892  TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 933



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 1048 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 1089



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            + +  S+P   STV N+S P++ S  +   +P + S +L SS
Sbjct: 1252 SVLNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSVLNSS 1293



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 1504 TVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSS 1545



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 1672 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 1713



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 1828 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 1869



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 2020 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2061



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 2284 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2325



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 2596 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2637



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 2692 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2733



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 2920 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2961



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            T +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 3280 TVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSS 3321



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 501  TAMTXSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 382
            TA+  S+P   STV N+S P++ S  + +    + S IL SS
Sbjct: 3424 TALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSILNSS 3465


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 284  NMDVPHVKREDYQLTDISDDGYL 352
            NM +P+++ E  Q+ D + D YL
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNYL 990


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 140 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 235
           + + E   +Q C N+  +N +A  R SS GWD
Sbjct: 41  YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,970
Number of Sequences: 5004
Number of extensions: 56781
Number of successful extensions: 249
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)