Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0204.Seq
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 110 2e-24
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 101 1e-21
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 93 4e-19
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 92 5e-19
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 1e-07
02_05_0250 + 27153048-27154453,27154546-27154885 33 0.23
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.40
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 31 1.2
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.6
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 4.9
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 4.9
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 29 4.9
05_01_0297 - 2314687-2316021 29 6.5
08_02_0610 + 19307537-19308011,19308187-19310846 28 8.5
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 28 8.5
04_01_0031 + 381389-381841 28 8.5
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 110 bits (264), Expect = 2e-24
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +3
Query: 48 MGDIEDTHFET-GDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVH 224
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 225 LVGIDIFNGKSXKISVP 275
VGIDIFNGK + VP
Sbjct: 61 FVGIDIFNGKKLEDIVP 77
Score = 89.4 bits (212), Expect = 3e-18
Identities = 40/86 (46%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Frame = +2
Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 430
K DI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P D L Q++
Sbjct: 71 KLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIKN 130
Query: 431 DF-DSGKELLCTVLKSCGEXCVIAVK 505
F + GK+++ TV+ + GE + AVK
Sbjct: 131 GFGEEGKDMILTVMSAMGEEQICAVK 156
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 101 bits (241), Expect = 1e-21
Identities = 47/81 (58%), Positives = 59/81 (72%), Gaps = 5/81 (6%)
Frame = +3
Query: 48 MGDIEDTHFET-GDSGASATFPMQXSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGH 212
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK +VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 213 AKVHLVGIDIFNGKSXKISVP 275
AK H V IDIFNGK + VP
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVP 94
Score = 91.5 bits (217), Expect = 8e-19
Identities = 40/85 (47%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 430
K DI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL++P D L Q++T
Sbjct: 88 KLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIKT 147
Query: 431 DFDSGKELLCTVLKSCGEXCVIAVK 505
F GK+L+ TV+ + GE + A+K
Sbjct: 148 GFGEGKDLVVTVMSAMGEEQICALK 172
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 92.7 bits (220), Expect = 4e-19
Identities = 40/85 (47%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 430
K DI PS+HN DVPHV R +YQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++
Sbjct: 103 KLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIKD 162
Query: 431 DFDSGKELLCTVLKSCGEXCVIAVK 505
F GK+L+ TV+ + GE + A+K
Sbjct: 163 GFGEGKDLVVTVMSAMGEEQICALK 187
Score = 54.8 bits (126), Expect(2) = 5e-18
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +3
Query: 48 MGDIEDTHFET-GDSGASATFPMQXSALRKNGFVMLKGRPCK 170
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
Score = 54.4 bits (125), Expect(2) = 5e-18
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +3
Query: 168 KIVEMSTSKTGKHGHAKVHLVGIDIFNGKSXKISVP 275
K+VE+STSKTGKHGHAK H V IDIF K + VP
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 109
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 92.3 bits (219), Expect = 5e-19
Identities = 47/90 (52%), Positives = 58/90 (64%), Gaps = 14/90 (15%)
Frame = +3
Query: 48 MGDIEDTHFET-GDSGASATFPMQXSALRKNGFVMLKGRPCK-------------IVEMS 185
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPCK +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 186 TSKTGKHGHAKVHLVGIDIFNGKSXKISVP 275
TSKTGKHGHAK H V IDIFNGK + VP
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVP 1412
Score = 91.5 bits (217), Expect = 8e-19
Identities = 41/85 (48%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 430
K DI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++DL++P D L TQ++
Sbjct: 1406 KLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALLTQIKD 1465
Query: 431 DFDSGKELLCTVLKSCGEXCVIAVK 505
F GK+L+ TV+ + GE + A+K
Sbjct: 1466 GFAEGKDLIVTVMSAMGEEQICALK 1490
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +2
Query: 299 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLK 472
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 473 SCG 481
+ G
Sbjct: 106 AMG 108
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 33.5 bits (73), Expect = 0.23
Identities = 22/57 (38%), Positives = 26/57 (45%)
Frame = +2
Query: 362 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEXCVIAVKATQLSTNKP 532
A GD DL IPD + TQ+ T+ S C V S G C AV A+ T P
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNSETVCP 303
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.7 bits (71), Expect = 0.40
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 88 PGPQPPSPCNXRPCVKMVSLC*RVVHARLLKCPHPKPE 201
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 9 HIIPDRC*IQNTTMGDIEDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMS 185
H+ +Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 423 HVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 290 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 409
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +2
Query: 368 NGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEXCVIAVKAT 511
N D D I G GTQ D +L +VLKS + CV A KA+
Sbjct: 730 NRDTDIDHFIELGKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKAS 777
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 398 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 484
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/90 (26%), Positives = 35/90 (38%)
Frame = +1
Query: 55 TSKTHTLRPETPGPQPPSPCNXRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLG 234
+S T + TP P PPSP + +V L V A P P +T++L G
Sbjct: 544 SSATPSPTARTPSPAPPSPIATKTSTSVV-LSLAAVRATSPATSSP-PRATSSLPLVGAG 601
Query: 235 LISSMVKVXRYLSLHTQHGRTSREARRLPT 324
+ Q G + EA++L T
Sbjct: 602 SSGPSTHEKKNRKKRAQKGDSDVEAKKLKT 631
>05_01_0297 - 2314687-2316021
Length = 444
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 323 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 481
+ D + +G L + AD D+R + DGD G +LR F S +LL V S G
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 71 VCVFDVTHCCVLNLTTVRNDM 9
VC FD+ CC L T+ NDM
Sbjct: 836 VCHFDLRTCCALPPATLENDM 856
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 49 WVTSKTHTLRPETPGPQPPSPCN 117
W+T T P+ P P PP PC+
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCD 74
>04_01_0031 + 381389-381841
Length = 150
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Frame = +1
Query: 37 KTQQWVTSKTHTLR-----PETPGPQPPSPCNXRP 126
+ ++W T +T TLR P+T P PP P P
Sbjct: 69 RERRWCTPRTSTLRREWALPDTASPPPPLPLEPAP 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,127,737
Number of Sequences: 37544
Number of extensions: 422188
Number of successful extensions: 1503
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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