Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0204.Seq
         (875 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                95   9e-20
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.8  
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            25   4.5  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               29   4.9  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   29   4.9  
SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33)              29   6.5  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 94.7 bits (225), Expect = 9e-20
 Identities = 42/60 (70%), Positives = 50/60 (83%)
 Frame = +3

Query: 42  TTMGDIEDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 221
           T   ++ DT F +G+SGAS T+P Q S+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644



 Score = 68.1 bits (159), Expect = 9e-12
 Identities = 28/62 (45%), Positives = 43/62 (69%)
 Frame = +2

Query: 320 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEXCVIA 499
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+ GE  V+ 
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702

Query: 500 VK 505
           VK
Sbjct: 703 VK 704


>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 132 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNGKSXKISVPPH 281
           + G +M +G+PCKI   +   K G HG   +H+ G D  NG    +S  PH
Sbjct: 17  RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG---CVSAGPH 62


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 25.4 bits (53), Expect(2) = 4.5
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +1

Query: 106 SPCNXRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKVXRY 267
           +PC  + C + +S+    V   ++K P   P    TL   ++G  +  +K+ +Y
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVKY 451



 Score = 22.2 bits (45), Expect(2) = 4.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 88  PGPQPPSPCNXRP 126
           PGPQ P P N  P
Sbjct: 362 PGPQDPGPGNILP 374


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 7   HISFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNXRPC 129
           H   L   K KT +  T+K +T +P T  P+   P   +PC
Sbjct: 92  HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 522 VESCVALTAMTXSS----PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIR 355
           V  C  L A++  S    P+  S V + +LP+   V  C+P SPS I RS    P     
Sbjct: 235 VVECGGLRAISECSDPYPPRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISN 293

Query: 354 VR 349
           VR
Sbjct: 294 VR 295


>SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33)
          Length = 657

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -1

Query: 344 HHPRY-QSVGSLRASREVRPCCVWRDRYLXTFTIEDINPN--QVNFSVAVLSGFGC 186
           HH    Q V  LR  RE+ PCC     +  +    D + N  Q N S  V+   GC
Sbjct: 601 HHTEVIQKVALLRKQRELSPCCAPTKMFDLSLLYYDKDENLFQENVSNMVVEECGC 656


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,548,070
Number of Sequences: 59808
Number of extensions: 475300
Number of successful extensions: 1345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)