Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0204.Seq
         (875 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic t...   150   3e-36
AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p pro...   148   9e-36
AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic i...   148   9e-36
AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB...   148   9e-36
AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA...   148   9e-36
AY121665-1|AAM51992.1|  709|Drosophila melanogaster RE10861p pro...    30   4.8  
AE014296-2303|AAF49800.1|  709|Drosophila melanogaster CG10710-P...    30   4.8  

>AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic
           translation initiationfactor 5a protein.
          Length = 159

 Score =  150 bits (363), Expect = 3e-36
 Identities = 66/84 (78%), Positives = 75/84 (89%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 433
           KY DICPSTHNMDVP+VKRED QL  ISDD +LTLM D+GDLREDLK+P+G+LG QLR D
Sbjct: 69  KYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTDSGDLREDLKVPEGELGEQLRLD 128

Query: 434 FDSGKELLCTVLKSCGEXCVIAVK 505
           FDSGK+LLCTVLK+CGE CVIA+K
Sbjct: 129 FDSGKDLLCTVLKACGEECVIAIK 152



 Score =  122 bits (294), Expect = 7e-28
 Identities = 57/76 (75%), Positives = 64/76 (84%)
 Frame = +3

Query: 48  MGDIEDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 227
           M +++D HFET DSGAS T+PMQ SALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 228 VGIDIFNGKSXKISVP 275
           VGIDIF+ K  +   P
Sbjct: 60  VGIDIFSNKKYEDICP 75


>AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p
           protein.
          Length = 159

 Score =  148 bits (359), Expect = 9e-36
 Identities = 65/84 (77%), Positives = 75/84 (89%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 433
           KY DICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G+LG QLR D
Sbjct: 69  KYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGEQLRLD 128

Query: 434 FDSGKELLCTVLKSCGEXCVIAVK 505
           FDSGK+LLCTVLK+CGE CVIA+K
Sbjct: 129 FDSGKDLLCTVLKACGEECVIAIK 152



 Score =  119 bits (286), Expect = 6e-27
 Identities = 56/76 (73%), Positives = 63/76 (82%)
 Frame = +3

Query: 48  MGDIEDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 227
           M +++D  FET DSGAS T+PMQ SALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 228 VGIDIFNGKSXKISVP 275
           VGIDIF+ K  +   P
Sbjct: 60  VGIDIFSNKKYEDICP 75


>AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic
           initiation factor 5A protein.
          Length = 159

 Score =  148 bits (359), Expect = 9e-36
 Identities = 65/84 (77%), Positives = 75/84 (89%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 433
           KY DICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G+LG QLR D
Sbjct: 69  KYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGEQLRLD 128

Query: 434 FDSGKELLCTVLKSCGEXCVIAVK 505
           FDSGK+LLCTVLK+CGE CVIA+K
Sbjct: 129 FDSGKDLLCTVLKACGEECVIAIK 152



 Score =  122 bits (294), Expect = 7e-28
 Identities = 57/76 (75%), Positives = 64/76 (84%)
 Frame = +3

Query: 48  MGDIEDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 227
           M +++D HFET DSGAS T+PMQ SALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 228 VGIDIFNGKSXKISVP 275
           VGIDIF+ K  +   P
Sbjct: 60  VGIDIFSNKKYEDICP 75


>AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB,
           isoform B protein.
          Length = 159

 Score =  148 bits (359), Expect = 9e-36
 Identities = 65/84 (77%), Positives = 75/84 (89%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 433
           KY DICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G+LG QLR D
Sbjct: 69  KYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGEQLRLD 128

Query: 434 FDSGKELLCTVLKSCGEXCVIAVK 505
           FDSGK+LLCTVLK+CGE CVIA+K
Sbjct: 129 FDSGKDLLCTVLKACGEECVIAIK 152



 Score =  119 bits (286), Expect = 6e-27
 Identities = 56/76 (73%), Positives = 63/76 (82%)
 Frame = +3

Query: 48  MGDIEDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 227
           M +++D  FET DSGAS T+PMQ SALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 228 VGIDIFNGKSXKISVP 275
           VGIDIF+ K  +   P
Sbjct: 60  VGIDIFSNKKYEDICP 75


>AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA,
           isoform A protein.
          Length = 159

 Score =  148 bits (359), Expect = 9e-36
 Identities = 65/84 (77%), Positives = 75/84 (89%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 433
           KY DICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G+LG QLR D
Sbjct: 69  KYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGEQLRLD 128

Query: 434 FDSGKELLCTVLKSCGEXCVIAVK 505
           FDSGK+LLCTVLK+CGE CVIA+K
Sbjct: 129 FDSGKDLLCTVLKACGEECVIAIK 152



 Score =  119 bits (286), Expect = 6e-27
 Identities = 56/76 (73%), Positives = 63/76 (82%)
 Frame = +3

Query: 48  MGDIEDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 227
           M +++D  FET DSGAS T+PMQ SALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 228 VGIDIFNGKSXKISVP 275
           VGIDIF+ K  +   P
Sbjct: 60  VGIDIFSNKKYEDICP 75


>AY121665-1|AAM51992.1|  709|Drosophila melanogaster RE10861p
           protein.
          Length = 709

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 199 PVLDVDIST-ILHGRPFSITKPFLRRAEXCMGKVAEAPESPVSKCVSSMSPI 47
           P    D+S  +LH  P S T   L  +   +   A AP SP S+C SS SP+
Sbjct: 552 PAPSTDLSPELLHISPESPTSTLLLPSSNHL-VAAVAPHSPASQCSSSQSPM 602


>AE014296-2303|AAF49800.1|  709|Drosophila melanogaster CG10710-PA
           protein.
          Length = 709

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 199 PVLDVDIST-ILHGRPFSITKPFLRRAEXCMGKVAEAPESPVSKCVSSMSPI 47
           P    D+S  +LH  P S T   L  +   +   A AP SP S+C SS SP+
Sbjct: 552 PAPSTDLSPELLHISPESPTSTLLLPSSNHL-VAAVAPHSPASQCSSSQSPM 602


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,248,005
Number of Sequences: 53049
Number of extensions: 705506
Number of successful extensions: 2401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2398
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)