Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0204.Seq
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   116   3e-26
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   104   1e-22
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   4.4  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  116 bits (278), Expect = 3e-26
 Identities = 53/72 (73%), Positives = 58/72 (80%)
 Frame = +3

Query: 60  EDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 239
           +D HF TGDSGA+ATFP Q SALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 240 IFNGKSXKISVP 275
           IF  K  +   P
Sbjct: 67  IFTSKKLEDICP 78



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLRT 430
           K  DICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG Q+R 
Sbjct: 72  KLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIRD 130

Query: 431 DFDSGK-ELLCTVLKSCGEXCVIAVKAT 511
            ++  +  +L  V+ + GE  ++  K +
Sbjct: 131 AYEKDEGSVLVQVVSAIGEEAILGWKVS 158


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  104 bits (249), Expect = 1e-22
 Identities = 47/72 (65%), Positives = 57/72 (79%)
 Frame = +3

Query: 60  EDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 239
           ++  F++ +SGA+ATFP Q SALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 240 IFNGKSXKISVP 275
           IF  K  +   P
Sbjct: 101 IFTTKKLEDICP 112



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLRT 430
           K  DICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG  +R 
Sbjct: 106 KLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGNTIRE 164

Query: 431 DFDSGK-ELLCTVLKSCGEXCVIAVK 505
             +  +  +L  V+ +CGE  ++  K
Sbjct: 165 ALEKDEGSVLVQVVAACGEEAILGYK 190


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +2

Query: 284 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 454
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 455 LCTVLKSCGEXC 490
              ++K CG+ C
Sbjct: 630 HAALVKECGDKC 641


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 55  TSKTHTLRPETPGPQPPSPCNXRP 126
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,807,062
Number of Sequences: 27780
Number of extensions: 345864
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)