Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0204.Seq
         (875 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...   103   1e-22
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...   100   1e-21
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...    96   2e-20
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ...    29   5.4  
At5g03140.1 68418.m00262 lectin protein kinase family protein co...    28   7.1  
At3g51290.1 68416.m05614 proline-rich family protein                   28   7.1  
At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1...    28   9.4  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score =  103 bits (248), Expect = 1e-22
 Identities = 43/72 (59%), Positives = 55/72 (76%)
 Frame = +3

Query: 60  EDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 239
           E+ HFE+ D+GAS T+P Q   +RKNG++++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 240 IFNGKSXKISVP 275
           IF  K  +  VP
Sbjct: 64  IFTSKKLEDIVP 75



 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 44/85 (51%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LGTQLRT 430
           K  DI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG  ++DLK+P+ D L  Q+++
Sbjct: 69  KLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKS 128

Query: 431 DFDSGKELLCTVLKSCGEXCVIAVK 505
            FD GK+L+ +V+ + GE  + A+K
Sbjct: 129 GFDDGKDLVVSVMSAMGEEQINALK 153


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score =  100 bits (239), Expect = 1e-21
 Identities = 42/72 (58%), Positives = 54/72 (75%)
 Frame = +3

Query: 60  EDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 239
           ++ HFE+ D+GAS T+P Q   +RK G +++KGRPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 240 IFNGKSXKISVP 275
           IF  K  +  VP
Sbjct: 64  IFTSKKLEDIVP 75



 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 43/85 (50%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 430
           K  DI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG  ++DLK+P D  L TQL+ 
Sbjct: 69  KLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKN 128

Query: 431 DFDSGKELLCTVLKSCGEXCVIAVK 505
            F+ GK+++ +V+ + GE  + A+K
Sbjct: 129 GFEEGKDIVVSVMSAMGEEQMCALK 153


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 43/85 (50%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
 Frame = +2

Query: 254 KYXDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRT 430
           K  DI PS+HN DVPHV R DYQL DI++DG+++L+ D+G  ++DLK+P D  L  Q+R 
Sbjct: 69  KLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRL 128

Query: 431 DFDSGKELLCTVLKSCGEXCVIAVK 505
            FD GK+++ +V+ S GE  + AVK
Sbjct: 129 GFDEGKDIVVSVMSSMGEEQICAVK 153



 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 40/72 (55%), Positives = 51/72 (70%)
 Frame = +3

Query: 60  EDTHFETGDSGASATFPMQXSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 239
           ++ HFE  +SGAS T+P     +RK G +++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 240 IFNGKSXKISVP 275
           IF  K  +  VP
Sbjct: 64  IFTAKKLEDIVP 75


>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 591

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 389 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEXC 490
           L IPDGD  T L      G   +C  L SCG  C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445


>At5g03140.1 68418.m00262 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 711

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 160 RPFSITKPFLRRAEXCMGKVAEAPESPVSKCVSSMS 53
           +P  +T+P +R     +   A+ PE P++K  SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666


>At3g51290.1 68416.m05614 proline-rich family protein 
          Length = 602

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 37  KTQQWVTSKTHTLRPETPGPQPPSP 111
           +T  W T+ T ++ P  P P PP P
Sbjct: 91  ETTTWTTTTTSSVLPPPPPPPPPPP 115


>At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1.2)
           plant glutamate receptor family, PMID:11379626
          Length = 867

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 783 LKFLLGQIDSHPLMVKXFQLENGEKFFKKKG 875
           LK LLG+   H LMVK     NG  F  +KG
Sbjct: 712 LKILLGENPGHFLMVKTQSTTNGFGFMFQKG 742


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,497
Number of Sequences: 28952
Number of extensions: 323168
Number of successful extensions: 913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)