Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0200.Seq
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.37 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   3.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   7.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   7.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   7.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   7.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   7.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   7.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   7.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   7.9  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 414 SSNAIRLEGWGSRCNYTETLELMSQGG*RIYVWMSMGSSNHLTPG 548
           + N+ +  G      Y E +EL  +GG ++ VW     + H+  G
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKV-VWDDTQKNTHMYKG 327


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 67  FYRPIEPFP 41
           FY+P++PFP
Sbjct: 199 FYQPLQPFP 207


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 123 TATNSNRRT*SRVVGPPSRTTASTGARFLRTSLTGVSAP 239
           T +NSN    S +  P S +T+  G     T+   +S+P
Sbjct: 131 TPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSP 169


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 123 TATNSNRRT*SRVVGPPSRTTASTGARFLRTSLTGVSAP 239
           T +NSN    S +  P S +T+  G     T+   +S+P
Sbjct: 131 TPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSP 169


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 123 TATNSNRRT*SRVVGPPSRTTASTGARFLRTSLTGVSAP 239
           T +NSN    S +  P S +T+  G     T+   +S+P
Sbjct: 131 TPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSP 169


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 123 TATNSNRRT*SRVVGPPSRTTASTGARFLRTSLTGVSAP 239
           T +NSN    S +  P S +T+  G     T+   +S+P
Sbjct: 131 TPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSP 169


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 123 TATNSNRRT*SRVVGPPSRTTASTGARFLRTSLTGVSAP 239
           T +NSN    S +  P S +T+  G     T+   +S+P
Sbjct: 131 TPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSP 169


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 123 TATNSNRRT*SRVVGPPSRTTASTGARFLRTSLTGVSAP 239
           T +NSN    S +  P S +T+  G     T+   +S+P
Sbjct: 87  TPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSP 125


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 123 TATNSNRRT*SRVVGPPSRTTASTGARFLRTSLTGVSAP 239
           T +NSN    S +  P S +T+  G     T+   +S+P
Sbjct: 131 TPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSP 169


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 123 TATNSNRRT*SRVVGPPSRTTASTGARFLRTSLTGVSAP 239
           T +NSN    S +  P S +T+  G     T+   +S+P
Sbjct: 131 TPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSP 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,758
Number of Sequences: 336
Number of extensions: 3051
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)