Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0200.Seq
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    89   6e-19
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    29   0.39 
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    26   3.6  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    26   4.8  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   4.8  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   4.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.3  
SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    25   6.3  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
            Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 88.6 bits (210), Expect = 6e-19
 Identities = 34/74 (45%), Positives = 49/74 (66%)
 Frame = +2

Query: 2    SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
            +++ W E+K +K R WF + VK D D GD W +FYK+ L  GNE QQ++V +    A+PH
Sbjct: 817  ARMLWLEKKADKARSWFLKAVKADQDNGDVWCWFYKYSLEAGNEDQQKEVLTSFETADPH 876

Query: 182  HGEYWCKVSKDIVN 223
            HG +W  ++KDI N
Sbjct: 877  HGYFWPSITKDIKN 890


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 26  KLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQ 139
           K+++ R +F+++  +DP  G AW  F     + G   Q
Sbjct: 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = +2

Query: 17  TERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPHHGEYW 196
           +++ +N  R  ++R +   P L   W  +  FE      +  E +  R  A  PH  + W
Sbjct: 50  SKQAINTLRSVYDRFLGKYPLLFGYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLW 109


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/62 (24%), Positives = 25/62 (40%)
 Frame = +2

Query: 11  FWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPHHGE 190
           ++ +  L +    FN ++KI+P     W  +    L         +  SRC +  P  GE
Sbjct: 531 YYKKGDLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINPEDGE 590

Query: 191 YW 196
            W
Sbjct: 591 SW 592


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 146  DVKSRCRAAEPHHGEYWCKVSKDIVNWCFSTDQI 247
            D +  CR  E  +GE W + S + +++  STD +
Sbjct: 1284 DTRELCRVGE--YGEIWMRSSANAISFFQSTDPV 1315


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 331 VTESLNLLVVGPLXSPHGYDHPAYFCREAVMRFGLKGGAAVV 456
           ++E   LL+   L +   YD P Y C   V RF  K   +VV
Sbjct: 179 LSERCKLLLQSELCNQDSYDCPGYIC---VYRFEQKNNPSVV 217


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 339  FRYMLTYIKLNVFKDLKSLRRNWQVFSDGSSI*SVLKHQLTMSLETLHQYSPWCGSA 169
            F ++  +I + +F   KSL  +W +   G  + S    Q+      +  Y PW G A
Sbjct: 2188 FLFLSMWIIMLMFLGRKSLTHSWLLPVFGVGLGSPRWLQMMWGTSNIGVYLPWAGVA 2244


>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 191 YWCKVSKDIVNWCFSTDQILLPSLKTCQFL 280
           YW  VSK++V   + + +I  PS     FL
Sbjct: 50  YWANVSKELVQQVYHSQKIAPPSNTHSPFL 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,994
Number of Sequences: 5004
Number of extensions: 48164
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)