Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0200.Seq
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0520 - 18495118-18498237 101 6e-22
01_01_1127 + 8930593-8932681,8932812-8933401 97 7e-21
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187... 30 1.6
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742... 29 2.8
10_07_0062 - 12499872-12501350 29 3.7
03_05_0239 + 22244565-22245144,22245249-22245594,22246847-222468... 29 3.7
10_05_0065 + 8736744-8738879 28 4.9
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 28 4.9
01_06_1749 - 39636951-39638102 27 8.6
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 101 bits (241), Expect = 6e-22
Identities = 42/83 (50%), Positives = 56/83 (67%)
Frame = +2
Query: 2 SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
++LFW +RK++K R W NR V + PD+GD WA +YKFEL HGN Q+DV RC AAEP
Sbjct: 939 AKLFWHDRKVDKARSWLNRAVTLAPDIGDFWALYYKFELQHGNADTQKDVLQRCVAAEPK 998
Query: 182 HGEYWCKVSKDIVNWCFSTDQIL 250
HGE W ++K + N S + +L
Sbjct: 999 HGERWQAITKAVENSHLSIEALL 1021
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 29 LNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPHHGEYW 196
L+K R K +P + W + EL HGN+++ + + ++ P G W
Sbjct: 850 LSKSRAVLTMARKKNPATPELWLAAVRAELRHGNKKEADALLAKALQECPTSGILW 905
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 97.5 bits (232), Expect = 7e-21
Identities = 40/83 (48%), Positives = 54/83 (65%)
Frame = +2
Query: 2 SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
++LFW +RK +K R W NR V + PD+GD WA +YKFEL HGN +DV RC A+EP
Sbjct: 792 AKLFWHDRKFDKARSWLNRAVTLAPDIGDFWALYYKFELQHGNADTHKDVVQRCVASEPK 851
Query: 182 HGEYWCKVSKDIVNWCFSTDQIL 250
HGE W ++K + N S + +L
Sbjct: 852 HGERWQAIAKAVENSHLSIEALL 874
>07_03_0244 -
15715047-15715163,15716672-15716824,15718629-15718748,
15718830-15719045,15719902-15719968,15720051-15720125,
15720607-15720698,15721053-15721154,15721642-15721711,
15721788-15721846,15721947-15722031,15722443-15722520,
15722627-15722725,15722819-15722910,15725572-15725661,
15725937-15725995,15727966-15728281,15728627-15728702,
15729998-15730308,15730577-15730634,15731082-15731092,
15731247-15731397,15733372-15733778
Length = 967
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 20 ERKLNKCREWFNRTVKIDPDLGDAW 94
++ L K + F R+V+IDP+ G+AW
Sbjct: 689 DKDLEKAVDAFTRSVQIDPENGEAW 713
>01_06_1788 -
39873900-39873986,39874009-39874137,39874180-39874246,
39874874-39874909,39875146-39875292,39875772-39875899,
39876349-39876435,39876523-39876633,39877433-39877600,
39877665-39877749,39877826-39877942,39878051-39878127,
39879981-39880077,39880175-39880377,39880519-39880645,
39880687-39880754,39880855-39880908,39880990-39881108,
39881651-39881729,39881803-39881865,39882113-39882232,
39882718-39882774,39882872-39882988,39883122-39883172,
39883262-39883360,39883438-39883583,39883740-39883887
Length = 928
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +2
Query: 14 WTER-KLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPHHGE 190
W E+ ++ +++ V++ P DAW GN Q + + A PH +
Sbjct: 130 WREKGDVDNAIQFYVHAVQLRPTFADAWTNLANAYTRKGNLSQAAECCHQALALNPHLAD 189
Query: 191 YWCKV 205
+C +
Sbjct: 190 AYCNL 194
>10_07_0062 - 12499872-12501350
Length = 492
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 143 PVAVRCREVTRIYRNTPKRPPSRD 72
P A E+TR+YR P+RP + +
Sbjct: 5 PAAAAVEELTRLYRELPRRPSAEE 28
>03_05_0239 +
22244565-22245144,22245249-22245594,22246847-22246868,
22246982-22247054,22247131-22247233,22247312-22247366,
22247448-22247542,22247913-22248204,22248292-22248495,
22248583-22248615
Length = 600
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 113 ELLHGNEQQQEDVKSRCRAAEPHHGEYWCKVSKDIVNW 226
E L E+++E+ R R +P H + W + ++ NW
Sbjct: 151 ERLGMEEREEEEGNERLREEKPWHNQLWGETVREEKNW 188
>10_05_0065 + 8736744-8738879
Length = 711
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +2
Query: 32 NKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEP 178
+ R F+R P DAWA + FEL HG + V R AA P
Sbjct: 176 DNARVVFDRWTSWRPG-ADAWAAYAAFELRHGELDRARAVHERHVAALP 223
>10_01_0307 +
3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 273 WQVFSDGSSI*SVLKHQLTMSLETL-HQYSPWC 178
W++ SSI SVL H L+MS + L H + +C
Sbjct: 691 WEILLYDSSIHSVLLHILSMSTQLLEHSHGSYC 723
>01_06_1749 - 39636951-39638102
Length = 383
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 464 SIVTTAAPPFKPNRITA 414
S+ + AAPPF P+RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,828,386
Number of Sequences: 37544
Number of extensions: 353890
Number of successful extensions: 1030
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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