Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0200.Seq
(597 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001666-1|AAH01666.1| 941|Homo sapiens PRP6 pre-mRNA processin... 135 1e-31
AL356790-1|CAH71582.1| 941|Homo sapiens PRP6 pre-mRNA processin... 135 1e-31
AL355803-2|CAC16610.2| 941|Homo sapiens PRP6 pre-mRNA processin... 135 1e-31
AL137320-1|CAB70695.1| 540|Homo sapiens hypothetical protein pr... 135 1e-31
AL118506-15|CAI21906.1| 941|Homo sapiens PRP6 pre-mRNA processi... 135 1e-31
AF221842-1|AAF66128.1| 941|Homo sapiens U5 snRNP-associated 102... 135 1e-31
AF026031-1|AAD01798.1| 941|Homo sapiens putative mitochondrial ... 135 1e-31
AB019219-1|BAA37140.1| 941|Homo sapiens protein ( Homo sapiens ... 135 1e-31
AK000665-1|BAA91315.1| 508|Homo sapiens protein ( Homo sapiens ... 33 1.0
>BC001666-1|AAH01666.1| 941|Homo sapiens PRP6 pre-mRNA processing
factor 6 homolog (S. cerevisiae) protein.
Length = 941
Score = 135 bits (326), Expect = 1e-31
Identities = 53/75 (70%), Positives = 64/75 (85%)
Frame = +2
Query: 2 SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
++LFW++RK+ K REWF+RTVKID DLGDAWA+FYKFEL HG E+QQE+V+ RC +AEP
Sbjct: 848 AKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPR 907
Query: 182 HGEYWCKVSKDIVNW 226
HGE WC VSKDI NW
Sbjct: 908 HGELWCAVSKDIANW 922
>AL356790-1|CAH71582.1| 941|Homo sapiens PRP6 pre-mRNA processing
factor 6 homolog (S. cerevisiae) protein.
Length = 941
Score = 135 bits (326), Expect = 1e-31
Identities = 53/75 (70%), Positives = 64/75 (85%)
Frame = +2
Query: 2 SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
++LFW++RK+ K REWF+RTVKID DLGDAWA+FYKFEL HG E+QQE+V+ RC +AEP
Sbjct: 848 AKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPR 907
Query: 182 HGEYWCKVSKDIVNW 226
HGE WC VSKDI NW
Sbjct: 908 HGELWCAVSKDIANW 922
>AL355803-2|CAC16610.2| 941|Homo sapiens PRP6 pre-mRNA processing
factor 6 homolog (S. cerevisiae) protein.
Length = 941
Score = 135 bits (326), Expect = 1e-31
Identities = 53/75 (70%), Positives = 64/75 (85%)
Frame = +2
Query: 2 SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
++LFW++RK+ K REWF+RTVKID DLGDAWA+FYKFEL HG E+QQE+V+ RC +AEP
Sbjct: 848 AKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPR 907
Query: 182 HGEYWCKVSKDIVNW 226
HGE WC VSKDI NW
Sbjct: 908 HGELWCAVSKDIANW 922
>AL137320-1|CAB70695.1| 540|Homo sapiens hypothetical protein
protein.
Length = 540
Score = 135 bits (326), Expect = 1e-31
Identities = 53/75 (70%), Positives = 64/75 (85%)
Frame = +2
Query: 2 SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
++LFW++RK+ K REWF+RTVKID DLGDAWA+FYKFEL HG E+QQE+V+ RC +AEP
Sbjct: 447 AKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPR 506
Query: 182 HGEYWCKVSKDIVNW 226
HGE WC VSKDI NW
Sbjct: 507 HGELWCAVSKDIANW 521
>AL118506-15|CAI21906.1| 941|Homo sapiens PRP6 pre-mRNA processing
factor 6 homolog (S. cerevisiae) protein.
Length = 941
Score = 135 bits (326), Expect = 1e-31
Identities = 53/75 (70%), Positives = 64/75 (85%)
Frame = +2
Query: 2 SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
++LFW++RK+ K REWF+RTVKID DLGDAWA+FYKFEL HG E+QQE+V+ RC +AEP
Sbjct: 848 AKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPR 907
Query: 182 HGEYWCKVSKDIVNW 226
HGE WC VSKDI NW
Sbjct: 908 HGELWCAVSKDIANW 922
>AF221842-1|AAF66128.1| 941|Homo sapiens U5 snRNP-associated 102 kDa
protein protein.
Length = 941
Score = 135 bits (326), Expect = 1e-31
Identities = 53/75 (70%), Positives = 64/75 (85%)
Frame = +2
Query: 2 SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
++LFW++RK+ K REWF+RTVKID DLGDAWA+FYKFEL HG E+QQE+V+ RC +AEP
Sbjct: 848 AKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPR 907
Query: 182 HGEYWCKVSKDIVNW 226
HGE WC VSKDI NW
Sbjct: 908 HGELWCAVSKDIANW 922
>AF026031-1|AAD01798.1| 941|Homo sapiens putative mitochondrial outer
membrane protein import receptor protein.
Length = 941
Score = 135 bits (326), Expect = 1e-31
Identities = 53/75 (70%), Positives = 64/75 (85%)
Frame = +2
Query: 2 SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
++LFW++RK+ K REWF+RTVKID DLGDAWA+FYKFEL HG E+QQE+V+ RC +AEP
Sbjct: 848 AKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPR 907
Query: 182 HGEYWCKVSKDIVNW 226
HGE WC VSKDI NW
Sbjct: 908 HGELWCAVSKDIANW 922
>AB019219-1|BAA37140.1| 941|Homo sapiens protein ( Homo sapiens mRNA,
complete cds, similar to yeast pre-mRNA splicing factors,
Prp1/Zer1 and Prp6. ).
Length = 941
Score = 135 bits (326), Expect = 1e-31
Identities = 53/75 (70%), Positives = 64/75 (85%)
Frame = +2
Query: 2 SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
++LFW++RK+ K REWF+RTVKID DLGDAWA+FYKFEL HG E+QQE+V+ RC +AEP
Sbjct: 848 AKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPR 907
Query: 182 HGEYWCKVSKDIVNW 226
HGE WC VSKDI NW
Sbjct: 908 HGELWCAVSKDIANW 922
>AK000665-1|BAA91315.1| 508|Homo sapiens protein ( Homo sapiens
cDNA FLJ20658 fis, clone KAT00985. ).
Length = 508
Score = 32.7 bits (71), Expect = 1.0
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +2
Query: 23 RKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPHHGEYWCK 202
++ +C E F R+VKI+P AW L + Q RC EP + E W
Sbjct: 206 KEFQECVECFERSVKINPMQLGAWFSLGCAYLALEDYQGSAKAFQRCVTLEPDNAEAWNN 265
Query: 203 VSKDIV 220
+S +
Sbjct: 266 LSTSYI 271
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,098,285
Number of Sequences: 237096
Number of extensions: 1894003
Number of successful extensions: 4190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4189
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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