Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0200.Seq
         (597 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021415-1|AAX33563.1|  931|Drosophila melanogaster LD04472p pro...   145   5e-35
AY094835-1|AAM11188.1|  143|Drosophila melanogaster LD43276p pro...   145   5e-35
AE014296-3081|AAF49211.2|  931|Drosophila melanogaster CG6841-PA...   145   5e-35
AY070940-1|AAL48562.1|  442|Drosophila melanogaster RE03814p pro...    30   2.7  
AE014297-2250|AAF55349.1|  543|Drosophila melanogaster CG10324-P...    30   2.7  
AJ252125-1|CAB64387.1|  470|Drosophila melanogaster Sox14 protei...    28   8.4  
AE013599-3763|AAF47126.2|  669|Drosophila melanogaster CG3090-PB...    28   8.4  
AE013599-3762|AAM68286.1|  669|Drosophila melanogaster CG3090-PA...    28   8.4  

>BT021415-1|AAX33563.1|  931|Drosophila melanogaster LD04472p protein.
          Length = 931

 Score =  145 bits (351), Expect = 5e-35
 Identities = 59/83 (71%), Positives = 70/83 (84%)
 Frame = +2

Query: 2    SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
            S+LFW+E K +KCR+WFNRTVKIDPDLGDAWAYFYKFELLHG E QQ++V  RC +AEP 
Sbjct: 838  SKLFWSEHKFSKCRDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRCISAEPT 897

Query: 182  HGEYWCKVSKDIVNWCFSTDQIL 250
            HGE WC+VSK+I NW F T ++L
Sbjct: 898  HGESWCRVSKNIQNWQFKTPEVL 920


>AY094835-1|AAM11188.1|  143|Drosophila melanogaster LD43276p
           protein.
          Length = 143

 Score =  145 bits (351), Expect = 5e-35
 Identities = 59/83 (71%), Positives = 70/83 (84%)
 Frame = +2

Query: 2   SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
           S+LFW+E K +KCR+WFNRTVKIDPDLGDAWAYFYKFELLHG E QQ++V  RC +AEP 
Sbjct: 50  SKLFWSEHKFSKCRDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRCISAEPT 109

Query: 182 HGEYWCKVSKDIVNWCFSTDQIL 250
           HGE WC+VSK+I NW F T ++L
Sbjct: 110 HGESWCRVSKNIQNWQFKTPEVL 132


>AE014296-3081|AAF49211.2|  931|Drosophila melanogaster CG6841-PA
            protein.
          Length = 931

 Score =  145 bits (351), Expect = 5e-35
 Identities = 59/83 (71%), Positives = 70/83 (84%)
 Frame = +2

Query: 2    SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
            S+LFW+E K +KCR+WFNRTVKIDPDLGDAWAYFYKFELLHG E QQ++V  RC +AEP 
Sbjct: 838  SKLFWSEHKFSKCRDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRCISAEPT 897

Query: 182  HGEYWCKVSKDIVNWCFSTDQIL 250
            HGE WC+VSK+I NW F T ++L
Sbjct: 898  HGESWCRVSKNIQNWQFKTPEVL 920


>AY070940-1|AAL48562.1|  442|Drosophila melanogaster RE03814p
           protein.
          Length = 442

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 313 TKRI*GFKVFKKELAGF*RRKQYLIGAETPVNDVLRNLAPVLAVVRLGGPT 161
           T ++ G +     LA   RR+  L+G E P  + +  +A  +A V  GGPT
Sbjct: 55  TIKMIGMQKTSSALASLMRRRAVLLGEEEPDPEEVTPVAQSIAEVTAGGPT 105


>AE014297-2250|AAF55349.1|  543|Drosophila melanogaster CG10324-PA
           protein.
          Length = 543

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 313 TKRI*GFKVFKKELAGF*RRKQYLIGAETPVNDVLRNLAPVLAVVRLGGPT 161
           T ++ G +     LA   RR+  L+G E P  + +  +A  +A V  GGPT
Sbjct: 55  TIKMIGMQKTSSALASLMRRRAVLLGEEEPDPEEVTPVAQSIAEVTAGGPT 105


>AJ252125-1|CAB64387.1|  470|Drosophila melanogaster Sox14 protein
           protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 170 RPDNATSRPPVAVRCREVTRIYRNTPKRP 84
           +P+ AT+ PP+++R   V  +   TP RP
Sbjct: 4   KPNQATTEPPLSLRPGTVPTVPATTPARP 32


>AE013599-3763|AAF47126.2|  669|Drosophila melanogaster CG3090-PB,
           isoform B protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 170 RPDNATSRPPVAVRCREVTRIYRNTPKRP 84
           +P+ AT+ PP+++R   V  +   TP RP
Sbjct: 4   KPNQATTEPPLSLRPGTVPTVPATTPARP 32


>AE013599-3762|AAM68286.1|  669|Drosophila melanogaster CG3090-PA,
           isoform A protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 170 RPDNATSRPPVAVRCREVTRIYRNTPKRP 84
           +P+ AT+ PP+++R   V  +   TP RP
Sbjct: 4   KPNQATTEPPLSLRPGTVPTVPATTPARP 32


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,443,354
Number of Sequences: 53049
Number of extensions: 575505
Number of successful extensions: 1614
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)