Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0200.Seq
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical ... 101 5e-22
Z99171-3|CAB16310.1| 374|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical pr... 28 4.4
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ... 28 4.4
AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ... 28 4.4
AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical ... 28 4.4
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 27 7.7
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 27 7.7
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 27 7.7
>AL132898-4|CAC14407.3| 968|Caenorhabditis elegans Hypothetical
protein Y59A8B.6 protein.
Length = 968
Score = 101 bits (241), Expect = 5e-22
Identities = 41/83 (49%), Positives = 59/83 (71%)
Frame = +2
Query: 2 SQLFWTERKLNKCREWFNRTVKIDPDLGDAWAYFYKFELLHGNEQQQEDVKSRCRAAEPH 181
++LFW+ERK+ K REWF R V +DPD GDA+A F FE +HG E+ ++ V +C +EP
Sbjct: 875 ARLFWSERKIKKAREWFVRAVNLDPDNGDAFANFLAFEQIHGKEEDRKSVFKKCVTSEPR 934
Query: 182 HGEYWCKVSKDIVNWCFSTDQIL 250
+G+ W VSKD +NW +T++IL
Sbjct: 935 YGDLWQSVSKDPINWRRTTEEIL 957
>Z99171-3|CAB16310.1| 374|Caenorhabditis elegans Hypothetical
protein F47G4.3 protein.
Length = 374
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 418 LLHGRNRQGGRTRAD*XEVLP--PVSSKIPLHANIHK 314
LL G++ QG T D E+L +S K P+ A++HK
Sbjct: 316 LLKGQSAQGPPTAQDVYEMLEINEISEKFPIFASVHK 352
>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 420 YCFTAEIGRVVVPVRTXKRSYHQ*VQRFRYMLTY---IKLNVFKDLKSLRRNWQVFSD 256
+CF + V+V ++ +++ + RF + +Y I L V D+ L +WQ+ D
Sbjct: 356 FCFVLVLSSVMVAMKGLDNLWYRYLMRFILLFSYIIPISLRVNLDMAKLFYSWQIGRD 413
>Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 420 YCFTAEIGRVVVPVRTXKRSYHQ*VQRFRYMLTY---IKLNVFKDLKSLRRNWQVFSD 256
+CF + V+V ++ +++ + RF + +Y I L V D+ L +WQ+ D
Sbjct: 320 FCFVLVLSSVMVAMKGLDNLWYRYLMRFILLFSYIIPISLRVNLDMAKLFYSWQIGRD 377
>Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 420 YCFTAEIGRVVVPVRTXKRSYHQ*VQRFRYMLTY---IKLNVFKDLKSLRRNWQVFSD 256
+CF + V+V ++ +++ + RF + +Y I L V D+ L +WQ+ D
Sbjct: 359 FCFVLVLSSVMVAMKGLDNLWYRYLMRFILLFSYIIPISLRVNLDMAKLFYSWQIGRD 416
>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 420 YCFTAEIGRVVVPVRTXKRSYHQ*VQRFRYMLTY---IKLNVFKDLKSLRRNWQVFSD 256
+CF + V+V ++ +++ + RF + +Y I L V D+ L +WQ+ D
Sbjct: 356 FCFVLVLSSVMVAMKGLDNLWYRYLMRFILLFSYIIPISLRVNLDMAKLFYSWQIGRD 413
>AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 420 YCFTAEIGRVVVPVRTXKRSYHQ*VQRFRYMLTY---IKLNVFKDLKSLRRNWQVFSD 256
+CF + V+V ++ +++ + RF + +Y I L V D+ L +WQ+ D
Sbjct: 320 FCFVLVLSSVMVAMKGLDNLWYRYLMRFILLFSYIIPISLRVNLDMAKLFYSWQIGRD 377
>AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 420 YCFTAEIGRVVVPVRTXKRSYHQ*VQRFRYMLTY---IKLNVFKDLKSLRRNWQVFSD 256
+CF + V+V ++ +++ + RF + +Y I L V D+ L +WQ+ D
Sbjct: 359 FCFVLVLSSVMVAMKGLDNLWYRYLMRFILLFSYIIPISLRVNLDMAKLFYSWQIGRD 416
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 438 LQAESHYCFTAEIGRVVVPVRTXKRSYHQ*VQRFRYMLTYIKLN--VFKDLKS 286
++AE+H T E G V + H+ + M+T KLN +F+DLK+
Sbjct: 1832 MEAEAHLNATVERGEYVEKRLNRAQQEHKKAEELLKMVTAQKLNETIFEDLKN 1884
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 438 LQAESHYCFTAEIGRVVVPVRTXKRSYHQ*VQRFRYMLTYIKLN--VFKDLKS 286
++AE+H T E G V + H+ + M+T KLN +F+DLK+
Sbjct: 1832 MEAEAHLNATVERGEYVEKRLNRAQQEHKKAEELLKMVTAQKLNETIFEDLKN 1884
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 438 LQAESHYCFTAEIGRVVVPVRTXKRSYHQ*VQRFRYMLTYIKLN--VFKDLKS 286
++AE+H T E G V + H+ + M+T KLN +F+DLK+
Sbjct: 1832 MEAEAHLNATVERGEYVEKRLNRAQQEHKKAEELLKMVTAQKLNETIFEDLKN 1884
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,759,926
Number of Sequences: 27780
Number of extensions: 281465
Number of successful extensions: 641
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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