Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0200.Seq
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.2  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 212 DIVNWCFSTDQILLPSL 262
           D ++W F ++ +LLPS+
Sbjct: 242 DKMSWLFESEDVLLPSV 258


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 516 SMGSSNHLTPGGL*SRPSTQKKKKKTR 596
           + GSSN   P  +  R   + KKKK++
Sbjct: 53  TFGSSNEALPQPISKRKDKEHKKKKSK 79


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 516 SMGSSNHLTPGGL*SRPSTQKKKKKTR 596
           + GSSN   P  +  R   + KKKK++
Sbjct: 53  TFGSSNEALPQPISKRKDKEHKKKKSK 79


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 230 NTS*RCP*KPCTSTRRGAARRPDNATSRPPVAVR 129
           +T+  CP  P T+ R G     +     PP  +R
Sbjct: 613 DTNQSCPSPPVTTKRDGTQETEERLPPLPPKRIR 646



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 146 PPVAVRCREVTRIYRNTPKRPPSRDRFLPSY*TIP 42
           PPV  +           P  PP R R +PS   +P
Sbjct: 621 PPVTTKRDGTQETEERLPPLPPKRIRKMPSMPLLP 655


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 269 CQFLLKDFKSLNTFSFMYVSM 331
           C F++K FK+     ++Y+ M
Sbjct: 425 CDFVVKLFKTFKDRKYLYMLM 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,638
Number of Sequences: 438
Number of extensions: 3684
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)