Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0199.Seq
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    52   8e-08
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    31   0.21 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   2.6  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   5.9  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   5.9  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   5.9  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
 Frame = +1

Query: 46  VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 222
           + +S+ L W +IR+NN FLVK+       F++EP NV+  ++ R++GL + KAVGV  N 
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60

Query: 223 DRKGFTVVYX*QRLPESPLKI 285
            R    +     +  + P K+
Sbjct: 61  PRGVVLITKTNPKNAQKPAKL 81


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 249 VHYCESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFDIALLH 103
           +HYC S  +  LHDT   LV       G + S +++     + D  L H
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMIDGRLHH 299


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 451 ASEVVNFDESG*LLQIAWSIPATHLSNVCLINFRW*F---LRLPWLSRVTGNQGSIPERE 621
           + E+++F E    L       +  L   C+IN  W     LRL +L +   NQ S  E++
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEEQK 302

Query: 622 PXKRLP 639
             KR+P
Sbjct: 303 QEKRVP 308


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 673 VICAPCCPXLDVVAVXQAPSPESNPDSPLPVTT 575
           V+  P    + V++V  +P+P +  + P PV+T
Sbjct: 166 VVSNPAAANVHVLSVAASPNPSTPSNGPAPVST 198


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 648 PWMW*PFXRLPLRNRTLIPRYP*QPW*SQKLPS 550
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 566 RRNYHRKLIRQTFERCVAGIDHAICKSYPDSSKLTTSDAR 447
           +R    +L R+ FERC A   H I     D +K+T    R
Sbjct: 245 KREMGSELHREQFERCFAYFSHDISNVPRDWNKVTNYSKR 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,373
Number of Sequences: 5004
Number of extensions: 58142
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)