Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0199.Seq
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     58   7e-09
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     56   4e-08
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     56   4e-08
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129...    30   2.0  
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574...    29   4.7  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    29   4.7  
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594...    29   4.7  
09_02_0336 - 7397745-7398308,7398813-7400723                           29   6.2  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
 Frame = +1

Query: 61  SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 210
           SL W +++ NN+FLVK+    N K  FSKEPNN+ N+HS++++GL +KK V V
Sbjct: 7   SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTV 59


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = +1

Query: 64  LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 210
           L W I++ NN FLVK+    N K  F+KEPNN+ N+HS++++GL +KK V +
Sbjct: 8   LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTI 59


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = +1

Query: 64  LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 210
           L W I++ NN FLVK+    N K  F+KEPNN+ N+HS++++GL +KK V +
Sbjct: 8   LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTI 59


>10_08_0630 -
           19410852-19411235,19411370-19412257,19412440-19412941,
           19413662-19414135,19414982-19415040,19415468-19415629
          Length = 822

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 700 TNLPVPGKXVICAPCCPXLDVVAVXQAPSPESNPDSPLPVTTMVVA 563
           T   +P   +I AP    +   A  Q P P   P  P P+T++  A
Sbjct: 402 TGQTIPMPPIIAAPAITVMPPPAPSQQPQPPPPPSHPTPITSVAPA 447


>09_02_0203 -
           5746068-5746307,5746469-5746729,5746833-5748239,
           5748588-5748714,5748800-5749119,5749202-5749963,
           5750749-5750898,5751007-5751096,5751196-5751340,
           5751440-5751617,5751753-5752448,5752555-5752753
          Length = 1524

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 39  LNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRGE 218
           L+ +N++++    H + Q I CE++   +    G         LQ   L+ + SC   GE
Sbjct: 691 LDSQNILISMSSQHIRNQAI-CEQSHLSRITYYGYFDTSLGRYLQDSLLNEKHSCLSCGE 749

Query: 219 P*QEGIHS 242
           P +  ++S
Sbjct: 750 PPEAHMYS 757


>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 43  TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 174
           T++ SS+L WM+I + N  L +  +    FSK P   T + +FR
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFR 621


>03_05_0394 +
           23758392-23758625,23759097-23759273,23759349-23759453,
           23759640-23759681,23759763-23759960,23760037-23760165,
           23760248-23760377,23761119-23761179,23761241-23761322,
           23761402-23761653
          Length = 469

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 162 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRHFYGLNLFLHQTXRA 10
           +VSHI+ +  E+  D+AL + EC +  + H  Q   H   + L    T  A
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPHSNSIYLSSSSTVLA 411


>09_02_0336 - 7397745-7398308,7398813-7400723
          Length = 824

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +3

Query: 48  KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 149
           KN ++  L+    +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,149,579
Number of Sequences: 37544
Number of extensions: 388258
Number of successful extensions: 890
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)