Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0199.Seq
         (856 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   9e-05
SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)                      40   0.002
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.005
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_650| Best HMM Match : rve (HMM E-Value=0.00048)                     28   8.4  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = -1

Query: 643 DVVAVXQAPSPESNPDSPLPVTTM 572
           DVVAV QAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)
          Length = 132

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +3

Query: 45  RKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRGEP 221
           R NV     D +P+  C PCE + Y+  +Q+G EQ   PP+L+     ++E C+C  +P
Sbjct: 55  RVNVTEENEDVYPELLCRPCEGSLYR--LQKGKEQ---PPILRSWTPHTEEGCFCEAKP 108


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = -1

Query: 634 AVXQAPSPESNPDSPLPVTTM 572
           AV QAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -2

Query: 633 PFXRLPLRNRTLIPRYP 583
           PF RLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_650| Best HMM Match : rve (HMM E-Value=0.00048)
          Length = 363

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 15  VVFGVEIGLNRKNVVVTELDDH--PQQQCIPCEEAQYQKAVQ 134
           V  G+E   N +N+ +T    +  P Q  +PC +A Y+  VQ
Sbjct: 239 VTIGMEKFTNPRNIQLTSTTTYVPPNQVYVPCSQALYKPEVQ 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,436,012
Number of Sequences: 59808
Number of extensions: 454287
Number of successful extensions: 1156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)