Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0199.Seq
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    52   4e-07
Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    31   0.79 
AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    31   0.79 
U23526-5|AAB36850.1|  391|Caenorhabditis elegans Acyltransferase...    29   4.2  
U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine rece...    28   9.7  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = +1

Query: 52  MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 210
           MS +L W +IRNN+AFL  +R I K FS E  N+  ++S +Y+GL +K A+ V
Sbjct: 1   MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV 53


>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
           protein T04F8.6 protein.
          Length = 766

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 6   CEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQC 152
           CEH+   + I   R+N+++ ELD +  QQ I   EA Y   +++  E+C
Sbjct: 275 CEHMQKQIHIANQRRNMLIEELDQN--QQSI---EASYNNRLKEMEERC 318


>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -2

Query: 276 RAFW*PLLXVHYCESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFDIALLHK 100
           R  + P + +   E+ PV+V ++ NS  V   +V   +EVSH   +  E    I L+HK
Sbjct: 179 RVIYGPYVNIPAFETKPVKVHYENNSPFVIATIVERFIEVSHWGNIAVEEY--IELVHK 235


>U23526-5|AAB36850.1|  391|Caenorhabditis elegans
           Acyltransferase-like protein 12 protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 327 GTKTDILSHSRYRLNF*RAFW*PLLXVHYCESLPVRVLHDTNSFL 193
           G KT ++ ++ Y + F + FW  L   HY   L   ++H   SFL
Sbjct: 345 GDKTKVIPNN-YEMMFAQVFWGCLYYAHYVYWLRPLIVHSWTSFL 388


>U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine
           receptor, class r protein10 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 149 LFGSLLNGFLILRFFTRNALLLRMIIQFS 63
           L  SL+NG  I  FF  N LL  +I+ F+
Sbjct: 255 LLWSLINGIYITSFFNSNPLLYSIILGFN 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,266,043
Number of Sequences: 27780
Number of extensions: 334054
Number of successful extensions: 824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)