Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0199.Seq
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   1.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.3  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 82  RNNNAFLVKKRNIKKPFSKEP 144
           R N+  L+KKRN   PF K P
Sbjct: 8   RINSCDLLKKRNENDPFLKRP 28


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 455 PKSLILMNLDNFCRSHG 505
           P+ L  +NL + CR HG
Sbjct: 430 PRELEAVNLGSACRIHG 446


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 82  RNNNAFLVKKRNIKKPFSK 138
           R N+  L+KKRN   PF K
Sbjct: 129 RINSCDLLKKRNENDPFLK 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,127
Number of Sequences: 438
Number of extensions: 3878
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)