Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0199.Seq
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            59   4e-09
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    52   4e-07
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.3  
At3g25420.1 68416.m03161 serine carboxypeptidase S10 family prot...    29   3.9  
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati...    29   3.9  
At4g17230.1 68417.m02591 scarecrow-like transcription factor 13 ...    29   5.2  
At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr...    28   9.1  

>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
 Frame = +1

Query: 64  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 210
           L W I++NNN FLVK   + N K  FSKE NN+TN+HS++++GL +KK V +
Sbjct: 8   LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTI 59


>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
 Frame = +1

Query: 64  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 210
           L W I++ NN FLVK   + N K  FSKE NN+ N++S++++GL +KK V +
Sbjct: 8   LIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTI 59


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 479 DSSKLTTSDARPSVDWF*SNKSTHPITGXSSD 384
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At3g25420.1 68416.m03161 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P37890) from [Oryza sativa]
          Length = 505

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -3

Query: 584 RDNHGSRRNYHRKLIRQTFERCVAGIDHAICKSYPDSSKLTTSDARPSVDWF*SNKSTHP 405
           R + GS   YHR L    F   +   DH +C  Y  S   T +     VD +    S + 
Sbjct: 401 RHDTGSMIEYHRNLTLSGFRALIFSGDHDMCVPYTGSEAWTKAMGYKVVDEWRPWMSNNQ 460

Query: 404 ITG 396
           + G
Sbjct: 461 VAG 463


>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
           (PAUSED) contains Pfam profile: PF04150 exportin-t,
           identical to PAUSED gi:30909318
          Length = 988

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = -1

Query: 517 SPVLTMRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVXVLIACISSRITTVIQ 347
           S +LT  + +V++ H+  RL +    ++  DL+  ++PS+  V+  C      +++Q
Sbjct: 301 SALLTGYAVEVLECHK--RLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQ 355


>At4g17230.1 68417.m02591 scarecrow-like transcription factor 13
           (SCL13)
          Length = 287

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 111 AQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRG 215
           +QY   +Q+ A+    PPLL+V  +D  +S + RG
Sbjct: 91  SQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARG 125


>At1g56130.1 68414.m06445 leucine-rich repeat family protein / protein
            kinase family protein contains Pfam domains PF00560:
            Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1032

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -3

Query: 296  GIALIFSGLSGSLCXLYTTVNPFLSGFSTTPTAFL*IKPLYLKEWRLVTLFGSLLNGFLI 117
            GIAL+ +  S +L    + V   LSG        +  KP Y+ +WR     GS L+GF I
Sbjct: 939  GIALLCTQTSHALRPPMSRVVAMLSG--DVEIGDVTSKPGYVSDWRFDDTTGSSLSGFQI 996


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,219,881
Number of Sequences: 28952
Number of extensions: 310601
Number of successful extensions: 734
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)