Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0197.Seq
         (872 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9W5A2 Cluster: CG14770-PA; n=2; Sophophora|Rep: CG1477...    85   2e-15
UniRef50_Q0C774 Cluster: Pupal cuticle protein, putative; n=2; C...    75   2e-12
UniRef50_UPI0000F2EBF5 Cluster: PREDICTED: similar to RNA polyme...    34   4.1  
UniRef50_Q9VXL1 Cluster: CG9163-PA, isoform A; n=16; Coelomata|R...    34   4.1  
UniRef50_Q54ET8 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  
UniRef50_Q6ZSM1 Cluster: CDNA FLJ45380 fis, clone BRHIP3020733; ...    33   7.2  
UniRef50_Q8TQD5 Cluster: Predicted protein; n=1; Methanosarcina ...    33   7.2  
UniRef50_Q4D4Y6 Cluster: Katanin-like protein, putative; n=2; Tr...    33   9.5  
UniRef50_A0EH89 Cluster: Chromosome undetermined scaffold_96, wh...    33   9.5  
UniRef50_Q12XE7 Cluster: Peptidase S8 and S53, subtilisin, kexin...    33   9.5  

>UniRef50_Q9W5A2 Cluster: CG14770-PA; n=2; Sophophora|Rep:
           CG14770-PA - Drosophila melanogaster (Fruit fly)
          Length = 151

 Score = 85.0 bits (201), Expect = 2e-15
 Identities = 38/74 (51%), Positives = 52/74 (70%)
 Frame = +1

Query: 25  SIKFEHFHPVPVYVKKEHSHLLKXPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIE 204
           S+KF H+H VPVY+KKE  HL+K P+E G ++Q LK++HP++EH H  GLVLE+  H+  
Sbjct: 70  SVKFHHYHAVPVYIKKEDQHLVKKPIEIGGTKQKLKILHPKSEHNHNHGLVLEN--HSES 127

Query: 205 HHIASAGLEHGSFE 246
           HH      EHG +E
Sbjct: 128 HH------EHGHYE 135


>UniRef50_Q0C774 Cluster: Pupal cuticle protein, putative; n=2;
           Culicidae|Rep: Pupal cuticle protein, putative - Aedes
           aegypti (Yellowfever mosquito)
          Length = 159

 Score = 75.4 bits (177), Expect = 2e-12
 Identities = 39/85 (45%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
 Frame = +1

Query: 25  SIKFEHFHPVPVYVKKEHSHLLKXPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRH--- 195
           S K  HFH VPVYVKKE    LK P+E    + NLK++HPETEH H  GL LE+      
Sbjct: 52  SFKIHHFHAVPVYVKKEDQQFLKHPVEVSGIKHNLKIVHPETEHNHAHGLTLENHSEFDS 111

Query: 196 ----NIEHHIASAGLEH-GSFEHGG 255
                  H +  AG EH  + E+GG
Sbjct: 112 KLHGGYGHDLGHAGSEHVAAQEYGG 136


>UniRef50_UPI0000F2EBF5 Cluster: PREDICTED: similar to RNA
           polymerase II subunit hsRPB4; n=1; Monodelphis
           domestica|Rep: PREDICTED: similar to RNA polymerase II
           subunit hsRPB4 - Monodelphis domestica
          Length = 195

 Score = 34.3 bits (75), Expect = 4.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 67  KKEHSHLLKXPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIE 204
           K+ HSHL K  L+ G  ++       E + KHGG     +DR  IE
Sbjct: 65  KQHHSHLGKFHLDSGAYQETTLKCEKEKDKKHGGEYGQPEDRTQIE 110


>UniRef50_Q9VXL1 Cluster: CG9163-PA, isoform A; n=16; Coelomata|Rep:
           CG9163-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 840

 Score = 34.3 bits (75), Expect = 4.1
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 25  SIKFEHFHPVPVYVKKEHSHLLKXPLEKGKSEQNLKLIHP--ETEHKHGGGLVLEDDRHN 198
           S+  +HFH   + +K   +H  +  LE      N +L+ P  + +H H GG +++ +RH+
Sbjct: 52  SLPKKHFHRTSLLIKA-FNHKFRLDLEL-----NSQLLSPNIQQKHYHVGGYLVDGNRHD 105

Query: 199 IEH 207
           IEH
Sbjct: 106 IEH 108


>UniRef50_Q54ET8 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 784

 Score = 33.5 bits (73), Expect = 7.2
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +1

Query: 139 HPETEHKHGGGLVLEDDRHNIEHHIASAGLEHGSFEHGGWN 261
           H   +H HG G    +  HN  HH    G  HG   HG  N
Sbjct: 406 HGHNQHNHGHGHNQHNHGHNHGHHNHGHGHNHGHHNHGHHN 446


>UniRef50_Q6ZSM1 Cluster: CDNA FLJ45380 fis, clone BRHIP3020733;
           n=1; Homo sapiens|Rep: CDNA FLJ45380 fis, clone
           BRHIP3020733 - Homo sapiens (Human)
          Length = 223

 Score = 33.5 bits (73), Expect = 7.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 281 TSMLQTLFQPPCSKLPCSRPAEAIWCSM 198
           TS+  T+  PP   L C  PAEA+WC +
Sbjct: 174 TSLPDTMMLPPSRALWCHLPAEALWCRL 201


>UniRef50_Q8TQD5 Cluster: Predicted protein; n=1; Methanosarcina
           acetivorans|Rep: Predicted protein - Methanosarcina
           acetivorans
          Length = 130

 Score = 33.5 bits (73), Expect = 7.2
 Identities = 19/62 (30%), Positives = 35/62 (56%)
 Frame = -1

Query: 431 FSVVMTVVFWLLKFSVSLQAFASFIAFEATG*VLITSLLETTMLIASVFQTSMLQTLFQP 252
           FS+  T ++    FS  L +F+ F  F  +   + +SLL +T+L +S+  +++LQ+    
Sbjct: 49  FSIFSTFLYSFSIFSTFLYSFSIFSTFLYSF-SIFSSLLSSTLLQSSLLSSTLLQSSLLS 107

Query: 251 PC 246
           PC
Sbjct: 108 PC 109


>UniRef50_Q4D4Y6 Cluster: Katanin-like protein, putative; n=2;
           Trypanosoma cruzi|Rep: Katanin-like protein, putative -
           Trypanosoma cruzi
          Length = 923

 Score = 33.1 bits (72), Expect = 9.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 115 SEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHI 213
           SE+ L  +H E E K  GG+V  +DR++IE  +
Sbjct: 42  SERRLTQLHEERERKSEGGVVAAEDRNSIERRL 74


>UniRef50_A0EH89 Cluster: Chromosome undetermined scaffold_96, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_96,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1896

 Score = 33.1 bits (72), Expect = 9.5
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -1

Query: 311 TTMLIASVFQTSMLQTLFQPPCSKLPCSRPAEAIWCSMLCLSSSRTSPPPCLCS 150
           +T +    +   +L      PC+K PC++ + ++     C+ +S+ SPP C C+
Sbjct: 181 STSVCTQCYDGYLLSATVCIPCTK-PCAKCSSSVTTCDTCVDTSKQSPPLCNCT 233


>UniRef50_Q12XE7 Cluster: Peptidase S8 and S53, subtilisin, kexin,
            sedolisin precursor; n=1; Methanococcoides burtonii DSM
            6242|Rep: Peptidase S8 and S53, subtilisin, kexin,
            sedolisin precursor - Methanococcoides burtonii (strain
            DSM 6242)
          Length = 1351

 Score = 33.1 bits (72), Expect = 9.5
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +2

Query: 110  ENQSKTSS*FTLRLNTSTAVDLSSRTTDTTLNTISLLLVLSTEALNTAAGTRSGA 274
            ++ S  +S   + LN+S+  +LS+RT DT+ N  S  + LS+     A+  RSG+
Sbjct: 1073 QSSSNGTSYSVVGLNSSSVYNLSTRTVDTSGNVNSSWVNLSSSTTAPASNQRSGS 1127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,614,192
Number of Sequences: 1657284
Number of extensions: 12665064
Number of successful extensions: 30878
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30859
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77882636090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)